RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 TKTL2Q9H0I9 626 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 CCDC68Q9H2F9 335 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 NMRK1Q9NWW6 199 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 VANGL2Q9ULK5 521 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 PPP2R3BQ9Y5P8 575 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 THP07101 528 aa15.24■□□□□ 0.03
CUX1-215ENST00000556210 ABHD2P08910 425 aa15.24■□□□□ 0.03
CUX1-215ENST00000556210 CSH1P0DML2 217 aa15.24■□□□□ 0.03
CUX1-215ENST00000556210 CSH2P0DML3 217 aa15.24■□□□□ 0.03
CUX1-215ENST00000556210 YBX3P16989 372 aaKnown RBP eCLIP15.24■□□□□ 0.035e-6■■■□□ 19.1
CUX1-215ENST00000556210 ERCC2P18074 760 aa15.24■□□□□ 0.03
CUX1-215ENST00000556210 ACADSBP45954 432 aa15.24■□□□□ 0.03
CUX1-215ENST00000556210 MFSD10Q14728 455 aa15.24■□□□□ 0.03
CUX1-215ENST00000556210 RFWD3Q6PCD5 774 aa15.24■□□□□ 0.03
CUX1-215ENST00000556210 LCLAT1Q6UWP7 414 aa15.24■□□□□ 0.03
CUX1-215ENST00000556210 GALNT4Q8N4A0 578 aa15.24■□□□□ 0.03
CUX1-215ENST00000556210 USP13Q92995 863 aaPredicted RBP15.24■□□□□ 0.03
CUX1-215ENST00000556210 ZMAT2Q96NC0 199 aaKnown RBP15.24■□□□□ 0.03
CUX1-215ENST00000556210 PCDHGC3Q9UN70 934 aa15.24■□□□□ 0.03
CUX1-215ENST00000556210 E7ENQ6 273 aa15.24■□□□□ 0.03
CUX1-215ENST00000556210 MFSD11O43934 449 aa15.24■□□□□ 0.03
CUX1-215ENST00000556210 PTPN1P18031 435 aaKnown RBP15.24■□□□□ 0.03
CUX1-215ENST00000556210 TSPAN8P19075 237 aa15.24■□□□□ 0.03
CUX1-215ENST00000556210 COG7P83436 770 aa15.24■□□□□ 0.03
CUX1-215ENST00000556210 PTP4A2Q12974 167 aa15.24■□□□□ 0.03
CUX1-215ENST00000556210 DLG2Q15700 870 aa15.24■□□□□ 0.03
CUX1-215ENST00000556210 KYAT1Q16773 422 aa15.24■□□□□ 0.03
CUX1-215ENST00000556210 CERCAMQ5T4B2 595 aa15.24■□□□□ 0.03
CUX1-215ENST00000556210 IZUMO2Q6UXV1 221 aa15.24■□□□□ 0.03
CUX1-215ENST00000556210 SPATA2LQ8IUW3 424 aaPredicted RBP15.24■□□□□ 0.03
CUX1-215ENST00000556210 ZNF483Q8TF39 744 aaPredicted RBP15.24■□□□□ 0.03
CUX1-215ENST00000556210 PYDC1Q8WXC3 89 aa15.24■□□□□ 0.03
CUX1-215ENST00000556210 PARK7Q99497 189 aaKnown RBP15.24■□□□□ 0.03
CUX1-215ENST00000556210 SPDYE5A6NIY4 337 aa15.24■□□□□ 0.03
CUX1-215ENST00000556210 LGR5O75473 907 aa15.24■□□□□ 0.03
CUX1-215ENST00000556210 CPB1P15086 417 aa15.24■□□□□ 0.03
CUX1-215ENST00000556210 KHDC1Q4VXA5 237 aaKnown RBP15.24■□□□□ 0.03
CUX1-215ENST00000556210 FAM117BQ6P1L5 589 aa15.24■□□□□ 0.03
CUX1-215ENST00000556210 SKA2Q8WVK7 121 aaPredicted RBP15.24■□□□□ 0.03
CUX1-215ENST00000556210 ZCWPW1Q9H0M4 648 aa15.24■□□□□ 0.03
CUX1-215ENST00000556210 SYBUQ9NX95 663 aa15.24■□□□□ 0.03
CUX1-215ENST00000556210 PROCP04070 461 aa15.23■□□□□ 0.03
CUX1-215ENST00000556210 CPA3P15088 417 aa15.23■□□□□ 0.03
CUX1-215ENST00000556210 BRCC3P46736 316 aa15.23■□□□□ 0.03
CUX1-215ENST00000556210 KIF19Q2TAC6 998 aa15.23■□□□□ 0.03
CUX1-215ENST00000556210 IRGCQ6NXR0 463 aa15.23■□□□□ 0.03
CUX1-215ENST00000556210 IFNEQ86WN2 208 aa15.23■□□□□ 0.03
CUX1-215ENST00000556210 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP15.23■□□□□ 0.036e-7■■■■■ 139.2
CUX1-215ENST00000556210 NAT8LQ8N9F0 302 aa15.23■□□□□ 0.03
CUX1-215ENST00000556210 PHF21BQ96EK2 531 aa15.23■□□□□ 0.03
CUX1-215ENST00000556210 PNPOQ9NVS9 261 aa15.23■□□□□ 0.03
CUX1-215ENST00000556210 RUVBL2Q9Y230 463 aaKnown RBP15.23■□□□□ 0.03
CUX1-215ENST00000556210 ADAMTSL1Q8N6G6 1762 aa15.23■□□□□ 0.03
CUX1-215ENST00000556210 SLC1A6P48664 564 aa15.23■□□□□ 0.03
CUX1-215ENST00000556210 NUDT2P50583 147 aa15.23■□□□□ 0.03
CUX1-215ENST00000556210 SYPL2Q5VXT5 272 aa15.23■□□□□ 0.03
CUX1-215ENST00000556210 C9orf57Q5W0N0 161 aa15.23■□□□□ 0.03
CUX1-215ENST00000556210 TP53INP2Q8IXH6 220 aa15.23■□□□□ 0.03
CUX1-215ENST00000556210 ARFGAP1Q8N6T3 406 aa15.23■□□□□ 0.03
CUX1-215ENST00000556210 STYXL1Q9Y6J8 313 aa15.23■□□□□ 0.03
CUX1-215ENST00000556210 SCN9AQ15858 1988 aa15.23■□□□□ 0.03
CUX1-215ENST00000556210 A0A096LPK6 155 aa15.23■□□□□ 0.03
CUX1-215ENST00000556210 PRR5-ARHGAP8B1AHC4 643 aa15.23■□□□□ 0.03
CUX1-215ENST00000556210 C2CD2LO14523 706 aa15.23■□□□□ 0.03
CUX1-215ENST00000556210 PEX11AO75192 247 aa15.23■□□□□ 0.03
CUX1-215ENST00000556210 SERPINB9P50453 376 aa15.23■□□□□ 0.03
CUX1-215ENST00000556210 ARHGAP8P85298 464 aa15.23■□□□□ 0.03
CUX1-215ENST00000556210 DYNC1I2Q13409 638 aaKnown RBP15.23■□□□□ 0.03
CUX1-215ENST00000556210 ANKRD52Q8NB46 1076 aa15.23■□□□□ 0.03
CUX1-215ENST00000556210 EMID1Q96A84 441 aaPredicted RBP15.23■□□□□ 0.03
CUX1-215ENST00000556210 KCTD15Q96SI1 283 aaPredicted RBP15.23■□□□□ 0.03
CUX1-215ENST00000556210 EBNA1BP2Q99848 306 aaKnown RBP15.23■□□□□ 0.03
CUX1-215ENST00000556210 TSPYL2Q9H2G4 693 aaPredicted RBP15.23■□□□□ 0.03
CUX1-215ENST00000556210 GBA2Q9HCG7 927 aaPredicted RBP15.23■□□□□ 0.03
CUX1-215ENST00000556210 PLA2G4CQ9UP65 541 aa15.23■□□□□ 0.03
CUX1-215ENST00000556210 CDK16Q00536 496 aa15.22■□□□□ 0.03
CUX1-215ENST00000556210 PLIN5Q00G26 463 aa15.22■□□□□ 0.03
CUX1-215ENST00000556210 ARHGAP1Q07960 439 aa15.22■□□□□ 0.03
CUX1-215ENST00000556210 PPIL2Q13356 520 aa15.22■□□□□ 0.03
CUX1-215ENST00000556210 MPP3Q13368 585 aa15.22■□□□□ 0.03
CUX1-215ENST00000556210 SCUBE1Q8IWY4 988 aa15.22■□□□□ 0.03
CUX1-215ENST00000556210 THEM5Q8N1Q8 247 aa15.22■□□□□ 0.03
CUX1-215ENST00000556210 OLIG1Q8TAK6 271 aa15.22■□□□□ 0.03
CUX1-215ENST00000556210 MFSD3Q96ES6 412 aa15.22■□□□□ 0.03
CUX1-215ENST00000556210 CCDC97Q96F63 343 aaPredicted RBP15.22■□□□□ 0.03
CUX1-215ENST00000556210 PRR11Q96HE9 360 aaPredicted RBP15.22■□□□□ 0.03
CUX1-215ENST00000556210 SP110Q9HB58 689 aa15.22■□□□□ 0.03
CUX1-215ENST00000556210 XPNPEP3Q9NQH7 507 aa15.22■□□□□ 0.03
CUX1-215ENST00000556210 FAM8A1Q9UBU6 413 aa15.22■□□□□ 0.03
CUX1-215ENST00000556210 OR12D3Q9UGF7 316 aa15.22■□□□□ 0.03
CUX1-215ENST00000556210 WFS1O76024 890 aa15.22■□□□□ 0.03
CUX1-215ENST00000556210 PIGRP01833 764 aa15.22■□□□□ 0.03
CUX1-215ENST00000556210 OR4Q2P0C623 313 aa15.22■□□□□ 0.03
CUX1-215ENST00000556210 HDAC4P56524 1084 aa15.22■□□□□ 0.03
CUX1-215ENST00000556210 CTBP1Q13363 440 aa15.22■□□□□ 0.03
CUX1-215ENST00000556210 GALNTL6Q49A17 601 aa15.22■□□□□ 0.03
CUX1-215ENST00000556210 ITPRIPL1Q6GPH6 555 aa15.22■□□□□ 0.03
CUX1-215ENST00000556210 PTAR1Q7Z6K3 402 aaPredicted RBP15.22■□□□□ 0.03
CUX1-215ENST00000556210 DEFB107AQ8IZN7 70 aa15.22■□□□□ 0.03
CUX1-215ENST00000556210 MIPOL1Q8TD10 442 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms