RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 PCDHGA5Q9Y5G8 931 aa21.37■■□□□ 1.01
CCDC88C-210ENST00000555995 STON1Q9Y6Q2 735 aa21.37■■□□□ 1.01
CCDC88C-210ENST00000555995 RALGAPA1Q6GYQ0 2036 aa21.36■■□□□ 1.01
CCDC88C-210ENST00000555995 GOLGA6L7A0A1B0GV03 622 aa21.36■■□□□ 1.01
CCDC88C-210ENST00000555995 ANTXRLA6NF34 631 aa21.36■■□□□ 1.01
CCDC88C-210ENST00000555995 TEX33O43247 280 aa21.36■■□□□ 1.01
CCDC88C-210ENST00000555995 SYNCRIPO60506 623 aaKnown RBP21.36■■□□□ 1.01
CCDC88C-210ENST00000555995 ZNF217O75362 1048 aa21.36■■□□□ 1.01
CCDC88C-210ENST00000555995 CALB1P05937 261 aa21.36■■□□□ 1.01
CCDC88C-210ENST00000555995 SULT1E1P49888 294 aa21.36■■□□□ 1.01
CCDC88C-210ENST00000555995 GSCP56915 257 aaPredicted RBP21.36■■□□□ 1.01
CCDC88C-210ENST00000555995 RNASE9P60153 205 aaKnown RBP21.36■■□□□ 1.01
CCDC88C-210ENST00000555995 PITX1P78337 314 aaPredicted RBP21.36■■□□□ 1.01
CCDC88C-210ENST00000555995 LPAL2Q16609 132 aa21.36■■□□□ 1.01
CCDC88C-210ENST00000555995 ZSCAN23Q3MJ62 389 aa21.36■■□□□ 1.01
CCDC88C-210ENST00000555995 RAP1GAP2Q684P5 730 aa21.36■■□□□ 1.01
CCDC88C-210ENST00000555995 SERPINA13PQ6UXR4 307 aa21.36■■□□□ 1.01
CCDC88C-210ENST00000555995 CHST9Q7L1S5 443 aa21.36■■□□□ 1.01
CCDC88C-210ENST00000555995 NT5C3BQ969T7 300 aa21.36■■□□□ 1.01
CCDC88C-210ENST00000555995 PPP1R9BQ96SB3 815 aa21.36■■□□□ 1.01
CCDC88C-210ENST00000555995 ACOX2Q99424 681 aa21.36■■□□□ 1.01
CCDC88C-210ENST00000555995 EDEM3Q9BZQ6 932 aa21.36■■□□□ 1.01
CCDC88C-210ENST00000555995 FBRSQ9HAH7 460 aa21.36■■□□□ 1.01
CCDC88C-210ENST00000555995 SEPT11Q9NVA2 429 aaKnown RBP21.36■■□□□ 1.01
CCDC88C-210ENST00000555995 STIM2Q9P246 746 aa21.36■■□□□ 1.01
CCDC88C-210ENST00000555995 HCN2Q9UL51 889 aa21.36■■□□□ 1.01
CCDC88C-210ENST00000555995 CLEC4EQ9ULY5 219 aa21.36■■□□□ 1.01
CCDC88C-210ENST00000555995 CKAP5Q14008 2032 aa21.36■■□□□ 1.01
CCDC88C-210ENST00000555995 GVINP1Q7Z2Y8 2422 aa21.36■■□□□ 1.01
CCDC88C-210ENST00000555995 A0A1B0GVM2 712 aa21.35■■□□□ 1.01
CCDC88C-210ENST00000555995 A0A1W2PQF6 199 aa21.35■■□□□ 1.01
CCDC88C-210ENST00000555995 TCAF2A6NFQ2 919 aa21.35■■□□□ 1.01
CCDC88C-210ENST00000555995 H0Y626 953 aa21.35■■□□□ 1.01
CCDC88C-210ENST00000555995 GOLGA8SH3BPF8 625 aa21.35■■□□□ 1.01
CCDC88C-210ENST00000555995 EPN2O95208 641 aa21.35■■□□□ 1.01
CCDC88C-210ENST00000555995 LUC7L3O95232 432 aaKnown RBP21.35■■□□□ 1.01
CCDC88C-210ENST00000555995 ASLP04424 464 aa21.35■■□□□ 1.01
CCDC88C-210ENST00000555995 CHRNB2P17787 502 aa21.35■■□□□ 1.01
CCDC88C-210ENST00000555995 POLR2EP19388 210 aaKnown RBP21.35■■□□□ 1.01
CCDC88C-210ENST00000555995 HOXC13P31276 330 aa21.35■■□□□ 1.01
CCDC88C-210ENST00000555995 P2RY2P41231 377 aa21.35■■□□□ 1.01
CCDC88C-210ENST00000555995 WASP42768 502 aa21.35■■□□□ 1.01
CCDC88C-210ENST00000555995 SGSHP51688 502 aa21.35■■□□□ 1.01
CCDC88C-210ENST00000555995 RPS24P62847 133 aaKnown RBP21.35■■□□□ 1.01
CCDC88C-210ENST00000555995 DEUP1Q05D60 604 aa21.35■■□□□ 1.01
CCDC88C-210ENST00000555995 SLC12A1Q13621 1099 aa21.35■■□□□ 1.01
CCDC88C-210ENST00000555995 ZNF234Q14588 700 aa21.35■■□□□ 1.01
CCDC88C-210ENST00000555995 CLEC16AQ2KHT3 1053 aa21.35■■□□□ 1.01
CCDC88C-210ENST00000555995 PLK5Q496M5 336 aa21.35■■□□□ 1.01
CCDC88C-210ENST00000555995 MMS22LQ6ZRQ5 1243 aa21.35■■□□□ 1.01
CCDC88C-210ENST00000555995 KBTBD6Q86V97 674 aa21.35■■□□□ 1.01
CCDC88C-210ENST00000555995 CARNMT1Q8N4J0 409 aa21.35■■□□□ 1.01
CCDC88C-210ENST00000555995 C11orf70Q9BRQ4 267 aa21.35■■□□□ 1.01
CCDC88C-210ENST00000555995 WDCPQ9H6R7 721 aa21.35■■□□□ 1.01
CCDC88C-210ENST00000555995 EP300Q09472 2414 aaPredicted RBP21.35■■□□□ 1.01
CCDC88C-210ENST00000555995 MUC22E2RYF6 1773 aaPredicted RBP21.34■■□□□ 1.01
CCDC88C-210ENST00000555995 DLDP09622 509 aaKnown RBP21.34■■□□□ 1.01
CCDC88C-210ENST00000555995 UNGP13051 313 aaPredicted RBP21.34■■□□□ 1.01
CCDC88C-210ENST00000555995 GABRG2P18507 467 aa21.34■■□□□ 1.01
CCDC88C-210ENST00000555995 IL12RB1P42701 662 aa21.34■■□□□ 1.01
CCDC88C-210ENST00000555995 CXCR3P49682 368 aa21.34■■□□□ 1.01
CCDC88C-210ENST00000555995 LMNB2Q03252 620 aa21.34■■□□□ 1.01
CCDC88C-210ENST00000555995 SPDYCQ5MJ68 293 aa21.34■■□□□ 1.01
CCDC88C-210ENST00000555995 MBLAC2Q68D91 279 aa21.34■■□□□ 1.01
CCDC88C-210ENST00000555995 SLC36A4Q6YBV0 504 aa21.34■■□□□ 1.01
CCDC88C-210ENST00000555995 LUZP1Q86V48 1076 aa21.34■■□□□ 1.01
CCDC88C-210ENST00000555995 PHF13Q86YI8 300 aaPredicted RBP21.34■■□□□ 1.01
CCDC88C-210ENST00000555995 AGPAT1Q99943 283 aa21.34■■□□□ 1.01
CCDC88C-210ENST00000555995 NUP58Q9BVL2 599 aa21.34■■□□□ 1.01
CCDC88C-210ENST00000555995 ADAM22Q9P0K1 906 aa21.34■■□□□ 1.01
CCDC88C-210ENST00000555995 KIAA1522Q9P206 1035 aaPredicted RBP21.34■■□□□ 1.01
CCDC88C-210ENST00000555995 TMEM59LQ9UK28 342 aa21.34■■□□□ 1.01
CCDC88C-210ENST00000555995 TPM3P06753 285 aa21.33■■□□□ 1.01
CCDC88C-210ENST00000555995 DESP17661 470 aa21.33■■□□□ 1.01
CCDC88C-210ENST00000555995 SDHBP21912 280 aa21.33■■□□□ 1.01
CCDC88C-210ENST00000555995 RDXP35241 583 aaKnown RBP21.33■■□□□ 1.01
CCDC88C-210ENST00000555995 DPP6P42658 865 aa21.33■■□□□ 1.01
CCDC88C-210ENST00000555995 ST8SIA6P61647 398 aa21.33■■□□□ 1.01
CCDC88C-210ENST00000555995 FNDC3BQ53EP0 1204 aaKnown RBP21.33■■□□□ 1.01
CCDC88C-210ENST00000555995 FIGNQ5HY92 759 aa21.33■■□□□ 1.01
CCDC88C-210ENST00000555995 PMS2CLQ68D20 193 aa21.33■■□□□ 1.01
CCDC88C-210ENST00000555995 KIAA2013Q8IYS2 634 aa21.33■■□□□ 1.01
CCDC88C-210ENST00000555995 DCLK2Q8N568 766 aa21.33■■□□□ 1.01
CCDC88C-210ENST00000555995 KDM1BQ8NB78 822 aa21.33■■□□□ 1.01
CCDC88C-210ENST00000555995 RPRD1AQ96P16 312 aaPredicted RBP21.33■■□□□ 1.01
CCDC88C-210ENST00000555995 PRMT1Q99873 361 aaKnown RBP21.33■■□□□ 1.01
CCDC88C-210ENST00000555995 DUSP15Q9H1R2 295 aaPredicted RBP21.33■■□□□ 1.01
CCDC88C-210ENST00000555995 METTL5Q9NRN9 209 aaKnown RBP21.33■■□□□ 1.01
CCDC88C-210ENST00000555995 PIGVQ9NUD9 493 aa21.33■■□□□ 1.01
CCDC88C-210ENST00000555995 ARHGEF38Q9NXL2 777 aa21.33■■□□□ 1.01
CCDC88C-210ENST00000555995 XPO7Q9UIA9 1087 aaKnown RBP21.33■■□□□ 1.01
CCDC88C-210ENST00000555995 USP18Q9UMW8 372 aa21.33■■□□□ 1.01
CCDC88C-210ENST00000555995 GPR179Q6PRD1 2367 aa21.32■■□□□ 1
CCDC88C-210ENST00000555995 THADAQ6YHU6 1953 aa21.32■■□□□ 1
CCDC88C-210ENST00000555995 ANKRD62A6NC57 917 aa21.32■■□□□ 1
CCDC88C-210ENST00000555995 PRR5-ARHGAP8B1AHC4 643 aa21.32■■□□□ 1
CCDC88C-210ENST00000555995 MAP3K13O43283 966 aa21.32■■□□□ 1
CCDC88C-210ENST00000555995 EPHX1P07099 455 aa21.32■■□□□ 1
CCDC88C-210ENST00000555995 SDC4P31431 198 aa21.32■■□□□ 1
CCDC88C-210ENST00000555995 CD70P32970 193 aa21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms