RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 MAN1C1Q9NR34 630 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 CHRAC1Q9NRG0 131 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 IARS2Q9NSE4 1012 aaKnown RBP5.75□□□□□ -1.49
LIMA1-215ENST00000552823 ZFATQ9P243 1243 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 MORF4L1Q9UBU8 362 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 OR12D3Q9UGF7 316 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 SLC39A10Q9ULF5 831 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 C5orf60A6NFR6 353 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 ENTPD5O75356 428 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 STK10O94804 968 aaKnown RBP5.75□□□□□ -1.49
LIMA1-215ENST00000552823 FSBPO95073 299 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 LTFP02788 710 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 GNAT1P11488 350 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 RPL17P18621 184 aaKnown RBP5.75□□□□□ -1.49
LIMA1-215ENST00000552823 ADRA1BP35368 520 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 SOX11P35716 441 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 SNX16P57768 344 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 EFEMP1Q12805 493 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 MTFR1Q15390 333 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 FBXO48Q5FWF7 155 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 MFSD14CQ5VZR4 134 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 ICE2Q659A1 982 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 TMCO2Q7Z6W1 182 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-215ENST00000552823 SLC26A11Q86WA9 606 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 SPATS2Q86XZ4 545 aaKnown RBP5.75□□□□□ -1.49
LIMA1-215ENST00000552823 ZMIZ2Q8NF64 920 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 TTC8Q8TAM2 541 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 AGAP11Q8TF27 550 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 CENPTQ96BT3 561 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 CCDC124Q96CT7 223 aaKnown RBP5.75□□□□□ -1.49
LIMA1-215ENST00000552823 CLPTM1LQ96KA5 538 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 FAM193BQ96PV7 902 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-215ENST00000552823 SEPT5Q99719 369 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-215ENST00000552823 TMEM120AQ9BXJ8 343 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 TRIM55Q9BYV6 548 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 ACTR5Q9H9F9 607 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-215ENST00000552823 C20orf96Q9NUD7 363 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-215ENST00000552823 NDFIP2Q9NV92 336 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 KIAA1257Q9ULG3 409 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 VANGL2Q9ULK5 521 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 NUMBLQ9Y6R0 609 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 LCTP09848 1927 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 PSME4Q14997 1843 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 A0A0U1RQS6 177 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 TPP1O14773 563 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 DGKIO75912 1065 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 LRIG2O94898 1065 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 APOEP02649 317 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 TSPAN8P19075 237 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 SP100P23497 879 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-215ENST00000552823 GABRB2P47870 512 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 EPHB1P54762 984 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 AQP5P55064 265 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 POU5F1BQ06416 359 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 CTBP1Q13363 440 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 ITGA9Q13797 1035 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 KCNJ11Q14654 390 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 STILQ15468 1287 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 ZBTB6Q15916 424 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 N4BP2L1Q5TBK1 243 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-215ENST00000552823 NXNQ6DKJ4 435 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 OVOS1Q6IE37 1185 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 SLC26A9Q7LBE3 791 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 CCDC91Q7Z6B0 441 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 DEFB128Q7Z7B8 93 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 TAC4Q86UU9 113 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 METTL23Q86XA0 190 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 RASAL3Q86YV0 1011 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 IFNL1Q8IU54 200 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 NPWQ8N729 165 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 LRRC52Q8N7C0 313 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 CCNYL1Q8N7R7 359 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 SNX31Q8N9S9 440 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 ACVR1CQ8NER5 493 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 OMDQ99983 421 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 SPON2Q9BUD6 331 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 PRM3Q9NNZ6 103 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 ARL8BQ9NVJ2 186 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 DNAJB4Q9UDY4 337 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 TEX264Q9Y6I9 313 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 KIF13BQ9NQT8 1826 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 ARHGAP42A6NI28 874 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 BNIP3LO60238 219 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 EDF1O60869 148 aaKnown RBP5.74□□□□□ -1.49
LIMA1-215ENST00000552823 BAG2O95816 211 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 TGM2P21980 687 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 NOS2P35228 1153 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 MSX2P35548 267 aaPredicted RBP5.74□□□□□ -1.49
LIMA1-215ENST00000552823 PLK1P53350 603 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 NAA25Q14CX7 972 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 LRRC36Q1X8D7 754 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 PKDCCQ504Y2 493 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 ADGRD1Q6QNK2 874 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 RPS27LQ71UM5 84 aaKnown RBP5.74□□□□□ -1.49
LIMA1-215ENST00000552823 STRA8Q7Z7C7 330 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 UNC93AQ86WB7 457 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 SPATA2LQ8IUW3 424 aaPredicted RBP5.74□□□□□ -1.49
LIMA1-215ENST00000552823 CFAP52Q8N1V2 620 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 GSTCDQ8NEC7 633 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 OR10T2Q8NGX3 314 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms