RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 SLC11A2P49281 568 aa13.38□□□□□ -0.27
PTCH1-221ENST00000550914 LRRC63Q05C16 580 aa13.38□□□□□ -0.27
PTCH1-221ENST00000550914 STILQ15468 1287 aa13.38□□□□□ -0.27
PTCH1-221ENST00000550914 PTPRNQ16849 979 aa13.38□□□□□ -0.27
PTCH1-221ENST00000550914 TTC31Q49AM3 519 aaPredicted RBP13.38□□□□□ -0.27
PTCH1-221ENST00000550914 ZNF658Q5TYW1 1059 aaPredicted RBP13.38□□□□□ -0.27
PTCH1-221ENST00000550914 PIK3R6Q5UE93 754 aa13.38□□□□□ -0.27
PTCH1-221ENST00000550914 MBLAC2Q68D91 279 aa13.38□□□□□ -0.27
PTCH1-221ENST00000550914 SLCO6A1Q86UG4 719 aa13.38□□□□□ -0.27
PTCH1-221ENST00000550914 FAM124AQ86V42 546 aa13.38□□□□□ -0.27
PTCH1-221ENST00000550914 CACUL1Q86Y37 369 aa13.38□□□□□ -0.27
PTCH1-221ENST00000550914 PNPLA1Q8N8W4 532 aa13.38□□□□□ -0.27
PTCH1-221ENST00000550914 CYB5D2Q8WUJ1 264 aa13.38□□□□□ -0.27
PTCH1-221ENST00000550914 SLC35F5Q8WV83 523 aa13.38□□□□□ -0.27
PTCH1-221ENST00000550914 SLC35C1Q96A29 364 aa13.38□□□□□ -0.27
PTCH1-221ENST00000550914 BTBD1Q9H0C5 482 aa13.38□□□□□ -0.27
PTCH1-221ENST00000550914 C6orf106Q9H6K1 298 aaPredicted RBP13.38□□□□□ -0.27
PTCH1-221ENST00000550914 SGK2Q9HBY8 427 aa13.38□□□□□ -0.27
PTCH1-221ENST00000550914 PRSS16Q9NQE7 514 aa13.38□□□□□ -0.27
PTCH1-221ENST00000550914 SCML1Q9UN30 329 aa13.38□□□□□ -0.27
PTCH1-221ENST00000550914 GCN1Q92616 2671 aaKnown RBP13.37□□□□□ -0.27
PTCH1-221ENST00000550914 MSI1O43347 362 aaKnown RBP13.37□□□□□ -0.27
PTCH1-221ENST00000550914 DFNA5O60443 496 aa13.37□□□□□ -0.27
PTCH1-221ENST00000550914 DNTTP04053 509 aa13.37□□□□□ -0.27
PTCH1-221ENST00000550914 POLR2EP19388 210 aaKnown RBP13.37□□□□□ -0.27
PTCH1-221ENST00000550914 CD27P26842 260 aa13.37□□□□□ -0.27
PTCH1-221ENST00000550914 CSNK1EP49674 416 aaKnown RBP13.37□□□□□ -0.27
PTCH1-221ENST00000550914 RPS14P62263 151 aaKnown RBP13.37□□□□□ -0.27
PTCH1-221ENST00000550914 SFSWAPQ12872 951 aaKnown RBP13.37□□□□□ -0.27
PTCH1-221ENST00000550914 PNOCQ13519 176 aa13.37□□□□□ -0.27
PTCH1-221ENST00000550914 ARID5BQ14865 1188 aa13.37□□□□□ -0.27
PTCH1-221ENST00000550914 CNGA2Q16280 664 aa13.37□□□□□ -0.27
PTCH1-221ENST00000550914 ZNF776Q68DI1 518 aaPredicted RBP13.37□□□□□ -0.27
PTCH1-221ENST00000550914 ANKRD40Q6AI12 368 aa13.37□□□□□ -0.27
PTCH1-221ENST00000550914 USP30Q70CQ3 517 aa13.37□□□□□ -0.27
PTCH1-221ENST00000550914 TMPRSS7Q7RTY8 843 aa13.37□□□□□ -0.27
PTCH1-221ENST00000550914 KDM1BQ8NB78 822 aa13.37□□□□□ -0.27
PTCH1-221ENST00000550914 SPATA20Q8TB22 786 aa13.37□□□□□ -0.27
PTCH1-221ENST00000550914 UBA3Q8TBC4 463 aa13.37□□□□□ -0.27
PTCH1-221ENST00000550914 SNX19Q92543 992 aa13.37□□□□□ -0.27
PTCH1-221ENST00000550914 IGSF8Q969P0 613 aa13.37□□□□□ -0.27
PTCH1-221ENST00000550914 HSFY1Q96LI6 401 aa13.37□□□□□ -0.27
PTCH1-221ENST00000550914 DDX50Q9BQ39 737 aaKnown RBP13.37□□□□□ -0.27
PTCH1-221ENST00000550914 CCDC86Q9H6F5 360 aaKnown RBP13.37□□□□□ -0.27
PTCH1-221ENST00000550914 METTL14Q9HCE5 456 aaKnown RBP13.37□□□□□ -0.27
PTCH1-221ENST00000550914 TM9SF3Q9HD45 589 aa13.37□□□□□ -0.27
PTCH1-221ENST00000550914 TOR4AQ9NXH8 423 aa13.37□□□□□ -0.27
PTCH1-221ENST00000550914 DKK4Q9UBT3 224 aa13.37□□□□□ -0.27
PTCH1-221ENST00000550914 ANKRD6Q9Y2G4 727 aa13.37□□□□□ -0.27
PTCH1-221ENST00000550914 NYNRINQ9P2P1 1898 aaKnown RBP13.37□□□□□ -0.27
PTCH1-221ENST00000550914 COL5A1P20908 1838 aaPredicted RBP13.36□□□□□ -0.27
PTCH1-221ENST00000550914 ASXL3Q9C0F0 2248 aa13.36□□□□□ -0.27
PTCH1-221ENST00000550914 PLXNA2O75051 1894 aa13.36□□□□□ -0.27
PTCH1-221ENST00000550914 PAPSS1O43252 624 aaPredicted RBP13.36□□□□□ -0.27
PTCH1-221ENST00000550914 PCDHGA12O60330 932 aa13.36□□□□□ -0.27
PTCH1-221ENST00000550914 ACSL4O60488 711 aa13.36□□□□□ -0.27
PTCH1-221ENST00000550914 TBL1XO60907 577 aa13.36□□□□□ -0.27
PTCH1-221ENST00000550914 FBXO21O94952 628 aa13.36□□□□□ -0.27
PTCH1-221ENST00000550914 SMC2O95347 1197 aa13.36□□□□□ -0.27
PTCH1-221ENST00000550914 LTFP02788 710 aa13.36□□□□□ -0.27
PTCH1-221ENST00000550914 ASLP04424 464 aa13.36□□□□□ -0.27
PTCH1-221ENST00000550914 LCP1P13796 627 aa13.36□□□□□ -0.27
PTCH1-221ENST00000550914 NNTQ13423 1086 aa13.36□□□□□ -0.27
PTCH1-221ENST00000550914 KIF19Q2TAC6 998 aa13.36□□□□□ -0.27
PTCH1-221ENST00000550914 FAM133BQ5BKY9 247 aaKnown RBP13.36□□□□□ -0.27
PTCH1-221ENST00000550914 PMF1Q6P1K2 205 aa13.36□□□□□ -0.27
PTCH1-221ENST00000550914 TMEM270Q6UE05 265 aa13.36□□□□□ -0.27
PTCH1-221ENST00000550914 FMR1NBQ8N0W7 255 aaPredicted RBP13.36□□□□□ -0.27
PTCH1-221ENST00000550914 GALNT15Q8N3T1 639 aa13.36□□□□□ -0.27
PTCH1-221ENST00000550914 ZNF366Q8N895 744 aa13.36□□□□□ -0.27
PTCH1-221ENST00000550914 HJURPQ8NCD3 748 aaPredicted RBP13.36□□□□□ -0.27
PTCH1-221ENST00000550914 FIBINQ8TAL6 211 aa13.36□□□□□ -0.27
PTCH1-221ENST00000550914 RHBDD1Q8TEB9 315 aa13.36□□□□□ -0.27
PTCH1-221ENST00000550914 TTC17Q96AE7 1141 aa13.36□□□□□ -0.27
PTCH1-221ENST00000550914 BIRC7Q96CA5 298 aa13.36□□□□□ -0.27
PTCH1-221ENST00000550914 LMLNQ96KR4 655 aa13.36□□□□□ -0.27
PTCH1-221ENST00000550914 RSPH9Q9H1X1 276 aaPredicted RBP13.36□□□□□ -0.27
PTCH1-221ENST00000550914 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.36□□□□□ -0.27
PTCH1-221ENST00000550914 GPSM3Q9Y4H4 160 aa13.36□□□□□ -0.27
PTCH1-221ENST00000550914 SNX11Q9Y5W9 270 aa13.36□□□□□ -0.27
PTCH1-221ENST00000550914 TYW5A2RUC4 315 aaKnown RBP13.35□□□□□ -0.27
PTCH1-221ENST00000550914 TNFSF14O43557 240 aa13.35□□□□□ -0.27
PTCH1-221ENST00000550914 RNASEH1O60930 286 aaKnown RBP13.35□□□□□ -0.27
PTCH1-221ENST00000550914 GABBR2O75899 941 aa13.35□□□□□ -0.27
PTCH1-221ENST00000550914 CD70P32970 193 aa13.35□□□□□ -0.27
PTCH1-221ENST00000550914 GRK6P43250 576 aa13.35□□□□□ -0.27
PTCH1-221ENST00000550914 FMO5P49326 533 aa13.35□□□□□ -0.27
PTCH1-221ENST00000550914 CCT8P50990 548 aa13.35□□□□□ -0.27
PTCH1-221ENST00000550914 SGSHP51688 502 aa13.35□□□□□ -0.27
PTCH1-221ENST00000550914 PMS1P54277 932 aaKnown RBP13.35□□□□□ -0.27
PTCH1-221ENST00000550914 TBX4P57082 545 aa13.35□□□□□ -0.27
PTCH1-221ENST00000550914 INAVAQ3KP66 663 aa13.35□□□□□ -0.27
PTCH1-221ENST00000550914 RFWD3Q6PCD5 774 aa13.35□□□□□ -0.27
PTCH1-221ENST00000550914 MFN1Q8IWA4 741 aa13.35□□□□□ -0.27
PTCH1-221ENST00000550914 ENGASEQ8NFI3 743 aa13.35□□□□□ -0.27
PTCH1-221ENST00000550914 WFDC5Q8TCV5 224 aa13.35□□□□□ -0.27
PTCH1-221ENST00000550914 TFAP2BQ92481 460 aa13.35□□□□□ -0.27
PTCH1-221ENST00000550914 MYO19Q96H55 970 aa13.35□□□□□ -0.27
PTCH1-221ENST00000550914 CEP63Q96MT8 703 aa13.35□□□□□ -0.27
PTCH1-221ENST00000550914 SERPINB11Q96P15 392 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms