RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 SH3PXD2AQ5TCZ1 1133 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 SZRD1Q7Z422 152 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 GIPC2Q8TF65 315 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 SLC15A5A6NIM6 579 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 CHADO15335 359 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 TSPAN1O60635 241 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 PGAM1P18669 254 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 RABGGTBP53611 331 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 AGAP9Q5VTM2 703 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 C9orf57Q5W0N0 161 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 TRABD2AQ86V40 505 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 SNX19Q92543 992 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 CENPTQ96BT3 561 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 SPATA17Q96L03 361 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 TRIM15Q9C019 465 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 ACSS3Q9H6R3 686 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 PKP3Q9Y446 797 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 FAM237BA0A1B0GVD1 139 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 MSCO60682 206 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 TFE3P19532 575 aaPredicted RBP16.67■□□□□ 0.26
CUX1-213ENST00000549414 PTPN4P29074 926 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 SLC1A6P48664 564 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 BFSP2Q13515 415 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 TXNRD3NBQ6F5E7 133 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 ARHGAP18Q8N392 663 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 RNF148Q8N7C7 305 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 LHX5Q9H2C1 402 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 ARHGAP26Q9UNA1 814 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 IPPQ9Y573 584 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 ORC6Q9Y5N6 252 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 ALDH2P05091 517 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 DARSP14868 501 aaKnown RBP16.67■□□□□ 0.26
CUX1-213ENST00000549414 CALB2P22676 271 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 SEL1L3Q68CR1 1132 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 MRNIPQ6NTE8 343 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 DDX50Q9BQ39 737 aaKnown RBP16.67■□□□□ 0.26
CUX1-213ENST00000549414 CENPKQ9BS16 269 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 MECRQ9BV79 373 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 IL1RAPL1Q9NZN1 696 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 SH3BP1Q9Y3L3 701 aa16.67■□□□□ 0.26
CUX1-213ENST00000549414 GLTPD2A6NH11 291 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 PYGLP06737 847 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 TIGD7Q6NT04 549 aaPredicted RBP16.66■□□□□ 0.26
CUX1-213ENST00000549414 LCLAT1Q6UWP7 414 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 SCUBE1Q8IWY4 988 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 EME1Q96AY2 570 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 DPEP3Q9H4B8 488 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 NMRK2Q9NPI5 230 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 TAF1P21675 1872 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 CNTRLQ7Z7A1 2325 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.66■□□□□ 0.26
CUX1-213ENST00000549414 ERI2A8K979 691 aaKnown RBP16.66■□□□□ 0.26
CUX1-213ENST00000549414 TPP1O14773 563 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 FAM155BO75949 473 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 NFKB1P19838 968 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 NFKBIAP25963 317 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 OR1E1P30953 314 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 THEMIS2Q5TEJ8 643 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 CHADLQ6NUI6 762 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 OXNAD1Q96HP4 312 aaPredicted RBP16.66■□□□□ 0.26
CUX1-213ENST00000549414 DRC3Q9H069 523 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 SLC17A7Q9P2U7 560 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 F8W8V4 182 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 AKAP10O43572 662 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 SRP72O76094 671 aaKnown RBP16.66■□□□□ 0.26
CUX1-213ENST00000549414 CNTFP26441 200 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 FLOT2Q14254 428 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 TEPSINQ96N21 525 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 PCDHB5Q9Y5E4 795 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 RAMP2O60895 175 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 KCNA3P22001 575 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 WEE1P30291 646 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 SP3Q02447 781 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 MED21Q13503 144 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 LRRC52Q8N7C0 313 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 TDRD5Q8NAT2 981 aaKnown RBP16.66■□□□□ 0.26
CUX1-213ENST00000549414 GPR152Q8TDT2 470 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 SOCS4Q8WXH5 440 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 TUBGCP3Q96CW5 907 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 UBE2OQ9C0C9 1292 aaKnown RBP16.66■□□□□ 0.26
CUX1-213ENST00000549414 ING2Q9H160 280 aa16.66■□□□□ 0.26
CUX1-213ENST00000549414 PKD1L3Q7Z443 1732 aa16.65■□□□□ 0.26
CUX1-213ENST00000549414 FZD9O00144 591 aa16.65■□□□□ 0.26
CUX1-213ENST00000549414 KPNA6O60684 536 aa16.65■□□□□ 0.26
CUX1-213ENST00000549414 MBL2P11226 248 aaPredicted RBP16.65■□□□□ 0.26
CUX1-213ENST00000549414 GRK2P25098 689 aa16.65■□□□□ 0.26
CUX1-213ENST00000549414 MATKP42679 507 aa16.65■□□□□ 0.26
CUX1-213ENST00000549414 MRPS6P82932 125 aaKnown RBP16.65■□□□□ 0.26
CUX1-213ENST00000549414 TMEM154Q6P9G4 183 aa16.65■□□□□ 0.26
CUX1-213ENST00000549414 CPT1BQ92523 772 aa16.65■□□□□ 0.26
CUX1-213ENST00000549414 SEPT8Q92599 483 aa16.65■□□□□ 0.26
CUX1-213ENST00000549414 ZNF670Q9BS34 389 aa16.65■□□□□ 0.26
CUX1-213ENST00000549414 TRIM54Q9BYV2 358 aa16.65■□□□□ 0.26
CUX1-213ENST00000549414 CASS4Q9NQ75 786 aa16.65■□□□□ 0.26
CUX1-213ENST00000549414 DLGAP2Q9P1A6 1054 aa16.65■□□□□ 0.26
CUX1-213ENST00000549414 TBKBP1A7MCY6 615 aa16.65■□□□□ 0.26
CUX1-213ENST00000549414 FSBPO95073 299 aa16.65■□□□□ 0.26
CUX1-213ENST00000549414 SMPD1P17405 629 aa16.65■□□□□ 0.26
CUX1-213ENST00000549414 ATXN1P54253 815 aaKnown RBP16.65■□□□□ 0.26
CUX1-213ENST00000549414 BST1Q10588 318 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms