RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 PCID2Q5JVF3 399 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 ZNF484Q5JVG2 852 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 ACSM6Q6P461 480 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 NAPRTQ6XQN6 538 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 PTF1AQ7RTS3 328 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 MAATS1Q7Z4T9 603 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 ANKS1BQ7Z6G8 1248 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 PNPLA1Q8N8W4 532 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 FAM71DQ8N9W8 422 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 LINS1Q8NG48 757 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 CLEC4CQ8WTT0 213 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 HTRA1Q92743 480 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 RBM17Q96I25 401 aaKnown RBP4.63□□□□□ -1.67
VPS29-205ENST00000548539 PPM1MQ96MI6 270 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 TWNKQ96RR1 684 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 MMS19Q96T76 1030 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 MACROD1Q9BQ69 325 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 CINPQ9BW66 212 aaPredicted RBP4.63□□□□□ -1.67
VPS29-205ENST00000548539 FSD1LQ9BXM9 530 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 KRTAP2-2Q9BYT5 123 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 ARHGAP39Q9C0H5 1083 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 WASH6PQ9NQA3 447 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 IL17RBQ9NRM6 502 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 ZNF69Q9UC07 566 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 BAG5Q9UL15 447 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 ADAMTS5Q9UNA0 930 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 DNAJC16Q9Y2G8 782 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 A6NLC8 198 aa4.62□□□□□ -1.67
VPS29-205ENST00000548539 PRRT4C9JH25 899 aa4.62□□□□□ -1.67
VPS29-205ENST00000548539 NKX2-8O15522 239 aa4.62□□□□□ -1.67
VPS29-205ENST00000548539 TFRCP02786 760 aaKnown RBP4.62□□□□□ -1.67
VPS29-205ENST00000548539 CELA2AP08217 269 aa4.62□□□□□ -1.67
VPS29-205ENST00000548539 ATP1A3P13637 1013 aa4.62□□□□□ -1.67
VPS29-205ENST00000548539 CCT8P50990 548 aa4.62□□□□□ -1.67
VPS29-205ENST00000548539 RCAN1P53805 252 aa4.62□□□□□ -1.67
VPS29-205ENST00000548539 PROK1P58294 105 aa4.62□□□□□ -1.67
VPS29-205ENST00000548539 TAS2R50P59544 299 aa4.62□□□□□ -1.67
VPS29-205ENST00000548539 RBM6P78332 1123 aaKnown RBP4.62□□□□□ -1.67
VPS29-205ENST00000548539 GPC5P78333 572 aa4.62□□□□□ -1.67
VPS29-205ENST00000548539 EFR3AQ14156 821 aa4.62□□□□□ -1.67
VPS29-205ENST00000548539 TBC1D25Q3MII6 688 aa4.62□□□□□ -1.67
VPS29-205ENST00000548539 RNASE12Q5GAN4 147 aaKnown RBP4.62□□□□□ -1.67
VPS29-205ENST00000548539 INTS11Q5TA45 600 aaKnown RBP4.62□□□□□ -1.67
VPS29-205ENST00000548539 KIAA1324Q6UXG2 1013 aaKnown RBP4.62□□□□□ -1.67
VPS29-205ENST00000548539 WDR53Q7Z5U6 358 aaPredicted RBP4.62□□□□□ -1.67
VPS29-205ENST00000548539 DDB2Q92466 427 aa4.62□□□□□ -1.67
VPS29-205ENST00000548539 STAMQ92783 540 aa4.62□□□□□ -1.67
VPS29-205ENST00000548539 HVCN1Q96D96 273 aa4.62□□□□□ -1.67
VPS29-205ENST00000548539 KTI12Q96EK9 354 aaPredicted RBP4.62□□□□□ -1.67
VPS29-205ENST00000548539 ELOVL1Q9BW60 279 aa4.62□□□□□ -1.67
VPS29-205ENST00000548539 SLC26A6Q9BXS9 759 aa4.62□□□□□ -1.67
VPS29-205ENST00000548539 CDCP1Q9H5V8 836 aa4.62□□□□□ -1.67
VPS29-205ENST00000548539 NOD2Q9HC29 1040 aa4.62□□□□□ -1.67
VPS29-205ENST00000548539 KCNK9Q9NPC2 374 aa4.62□□□□□ -1.67
VPS29-205ENST00000548539 UBN1Q9NPG3 1134 aa4.62□□□□□ -1.67
VPS29-205ENST00000548539 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.61□□□□□ -1.67
VPS29-205ENST00000548539 KLK10O43240 276 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 HOXC11O43248 304 aaPredicted RBP4.61□□□□□ -1.67
VPS29-205ENST00000548539 EXOC3O60645 756 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 TJP3O95049 919 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 BMP15O95972 392 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 MBPP02686 304 aaPredicted RBP4.61□□□□□ -1.67
VPS29-205ENST00000548539 CSF1P09603 554 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 FAM163BP0C2L3 166 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 CBSLP0DN79 551 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 CBSP35520 551 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 CDK7P50613 346 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 JAK3P52333 1124 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 GEMIN4P57678 1058 aaKnown RBP4.61□□□□□ -1.67
VPS29-205ENST00000548539 CYP4F2P78329 520 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 TLE2Q04725 743 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 CHRNDQ07001 517 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 DDX10Q13206 875 aaKnown RBP4.61□□□□□ -1.67
VPS29-205ENST00000548539 ANKRD1Q15327 319 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 EZH2Q15910 746 aaKnown RBP4.61□□□□□ -1.67
VPS29-205ENST00000548539 CTXN3Q4LDR2 81 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 MAP3K21Q5TCX8 1036 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 DENND2CQ68D51 928 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 RETSATQ6NUM9 610 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 ANKRD16Q6P6B7 361 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 RASAL3Q86YV0 1011 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 C12orf76Q8N812 135 aaPredicted RBP4.61□□□□□ -1.67
VPS29-205ENST00000548539 FSIP1Q8NA03 581 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 PPHLN1Q8NEY8 458 aaKnown RBP4.61□□□□□ -1.67
VPS29-205ENST00000548539 OR52L2PQ8NGH6 319 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 MAFAQ8NHW3 353 aaPredicted RBP4.61□□□□□ -1.67
VPS29-205ENST00000548539 ARRDC3Q96B67 414 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 EDC3Q96F86 508 aaKnown RBP4.61□□□□□ -1.67
VPS29-205ENST00000548539 TRMT61AQ96FX7 289 aaKnown RBP4.61□□□□□ -1.67
VPS29-205ENST00000548539 UROC1Q96N76 676 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 REEP2Q9BRK0 252 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 HERC2P3Q9BVR0 1158 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 GPR63Q9BZJ6 419 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 CIPCQ9C0C6 399 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 RASSF1Q9NS23 344 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 SMC4Q9NTJ3 1288 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 ABHD10Q9NUJ1 306 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 TMEM160Q9NX00 188 aa4.61□□□□□ -1.67
VPS29-205ENST00000548539 VWA3AA6NCI4 1184 aa4.6□□□□□ -1.67
VPS29-205ENST00000548539 MBD3L5A6NJ08 208 aaPredicted RBP4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms