RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 GATMP50440 423 aa8.8□□□□□ -1
VPS29-203ENST00000546588 ZNF143P52747 638 aaPredicted RBP8.8□□□□□ -1
VPS29-203ENST00000546588 SLC8A3P57103 927 aa8.8□□□□□ -1
VPS29-203ENST00000546588 DEFB103AP81534 67 aa8.8□□□□□ -1
VPS29-203ENST00000546588 SLC6A3Q01959 620 aa8.8□□□□□ -1
VPS29-203ENST00000546588 SLC25A11Q02978 314 aaKnown RBP8.8□□□□□ -1
VPS29-203ENST00000546588 RNASELQ05823 741 aaKnown RBP8.8□□□□□ -1
VPS29-203ENST00000546588 FPGSQ05932 587 aa8.8□□□□□ -1
VPS29-203ENST00000546588 GPR17Q13304 367 aa8.8□□□□□ -1
VPS29-203ENST00000546588 EIF4EBP2Q13542 120 aaPredicted RBP8.8□□□□□ -1
VPS29-203ENST00000546588 RPS6KA1Q15418 735 aa8.8□□□□□ -1
VPS29-203ENST00000546588 FXNQ16595 210 aa8.8□□□□□ -1
VPS29-203ENST00000546588 NFE2Q16621 373 aaPredicted RBP8.8□□□□□ -1
VPS29-203ENST00000546588 TAZQ16635 292 aa8.8□□□□□ -1
VPS29-203ENST00000546588 ICE2Q659A1 982 aa8.8□□□□□ -1
VPS29-203ENST00000546588 TRNP1Q6NT89 227 aa8.8□□□□□ -1
VPS29-203ENST00000546588 C4orf50Q6ZRC1 276 aa8.8□□□□□ -1
VPS29-203ENST00000546588 CYP4V2Q6ZWL3 525 aaPredicted RBP8.8□□□□□ -1
VPS29-203ENST00000546588 PIGZQ86VD9 579 aa8.8□□□□□ -1
VPS29-203ENST00000546588 LRRTM3Q86VH5 581 aa8.8□□□□□ -1
VPS29-203ENST00000546588 TMEM173Q86WV6 379 aaPredicted RBP8.8□□□□□ -1
VPS29-203ENST00000546588 KATNAL2Q8IYT4 538 aa8.8□□□□□ -1
VPS29-203ENST00000546588 THEM5Q8N1Q8 247 aa8.8□□□□□ -1
VPS29-203ENST00000546588 COG1Q8WTW3 980 aa8.8□□□□□ -1
VPS29-203ENST00000546588 BCL7CQ8WUZ0 217 aaPredicted RBP8.8□□□□□ -1
VPS29-203ENST00000546588 IRGQQ8WZA9 623 aa8.8□□□□□ -1
VPS29-203ENST00000546588 MYLPFQ96A32 169 aa8.8□□□□□ -1
VPS29-203ENST00000546588 PGAP3Q96FM1 320 aaPredicted RBP8.8□□□□□ -1
VPS29-203ENST00000546588 IGSF21Q96ID5 467 aa8.8□□□□□ -1
VPS29-203ENST00000546588 SLC2A13Q96QE2 648 aa8.8□□□□□ -1
VPS29-203ENST00000546588 SLC9A7Q96T83 725 aa8.8□□□□□ -1
VPS29-203ENST00000546588 HERC2P3Q9BVR0 1158 aa8.8□□□□□ -1
VPS29-203ENST00000546588 VN1R3Q9BXE9 311 aa8.8□□□□□ -1
VPS29-203ENST00000546588 TRIM7Q9C029 511 aa8.8□□□□□ -1
VPS29-203ENST00000546588 KRT82Q9NSB4 513 aa8.8□□□□□ -1
VPS29-203ENST00000546588 COMMD8Q9NX08 183 aa8.8□□□□□ -1
VPS29-203ENST00000546588 MAFFQ9ULX9 164 aa8.8□□□□□ -1
VPS29-203ENST00000546588 FAN1Q9Y2M0 1017 aa8.8□□□□□ -1
VPS29-203ENST00000546588 NUP210Q8TEM1 1887 aaPredicted RBP8.79□□□□□ -1
VPS29-203ENST00000546588 KIF26AQ9ULI4 1882 aaPredicted RBP8.79□□□□□ -1
VPS29-203ENST00000546588 H3BRJ5 948 aa8.79□□□□□ -1
VPS29-203ENST00000546588 H7C4K7 107 aa8.79□□□□□ -1
VPS29-203ENST00000546588 MDM4O15151 490 aa8.79□□□□□ -1
VPS29-203ENST00000546588 HSF2BPO75031 334 aa8.79□□□□□ -1
VPS29-203ENST00000546588 LRCH4O75427 683 aa8.79□□□□□ -1
VPS29-203ENST00000546588 DAB1O75553 588 aa8.79□□□□□ -1
VPS29-203ENST00000546588 RGS9O75916 674 aaPredicted RBP8.79□□□□□ -1
VPS29-203ENST00000546588 BEST1O76090 585 aa8.79□□□□□ -1
VPS29-203ENST00000546588 SOD2P04179 222 aa8.79□□□□□ -1
VPS29-203ENST00000546588 PDGFRBP09619 1106 aa8.79□□□□□ -1
VPS29-203ENST00000546588 IBSPP21815 317 aaPredicted RBP8.79□□□□□ -1
VPS29-203ENST00000546588 ACAT1P24752 427 aaKnown RBP8.79□□□□□ -1
VPS29-203ENST00000546588 RFC1P35251 1148 aaPredicted RBP8.79□□□□□ -1
VPS29-203ENST00000546588 PPM1AP35813 382 aa8.79□□□□□ -1
VPS29-203ENST00000546588 MRPS5P82675 430 aaKnown RBP8.79□□□□□ -1
VPS29-203ENST00000546588 TSPY1Q01534 308 aa8.79□□□□□ -1
VPS29-203ENST00000546588 KLF1Q13351 362 aaPredicted RBP8.79□□□□□ -1
VPS29-203ENST00000546588 CYP1B1Q16678 543 aa8.79□□□□□ -1
VPS29-203ENST00000546588 PTPROQ16827 1216 aa8.79□□□□□ -1
VPS29-203ENST00000546588 MDH1BQ5I0G3 518 aa8.79□□□□□ -1
VPS29-203ENST00000546588 EFHC1Q5JVL4 640 aa8.79□□□□□ -1
VPS29-203ENST00000546588 TMEM240Q5SV17 173 aa8.79□□□□□ -1
VPS29-203ENST00000546588 CYP4A22Q5TCH4 519 aa8.79□□□□□ -1
VPS29-203ENST00000546588 PSTKQ8IV42 348 aaKnown RBP8.79□□□□□ -1
VPS29-203ENST00000546588 DCP1BQ8IZD4 617 aaKnown RBP8.79□□□□□ -1
VPS29-203ENST00000546588 MMGT1Q8N4V1 131 aa8.79□□□□□ -1
VPS29-203ENST00000546588 ARFGAP1Q8N6T3 406 aa8.79□□□□□ -1
VPS29-203ENST00000546588 UBL4BQ8N7F7 174 aa8.79□□□□□ -1
VPS29-203ENST00000546588 C12orf50Q8NA57 414 aaPredicted RBP8.79□□□□□ -1
VPS29-203ENST00000546588 MNS1Q8NEH6 495 aa8.79□□□□□ -1
VPS29-203ENST00000546588 JOSD2Q8TAC2 188 aa8.79□□□□□ -1
VPS29-203ENST00000546588 UBA3Q8TBC4 463 aa8.79□□□□□ -1
VPS29-203ENST00000546588 SPPL2BQ8TCT7 592 aa8.79□□□□□ -1
VPS29-203ENST00000546588 PIWIL1Q96J94 861 aaKnown RBP8.79□□□□□ -1
VPS29-203ENST00000546588 C8orf48Q96LL4 319 aa8.79□□□□□ -1
VPS29-203ENST00000546588 MCEEQ96PE7 176 aa8.79□□□□□ -1
VPS29-203ENST00000546588 CNPY3Q9BT09 278 aa8.79□□□□□ -1
VPS29-203ENST00000546588 DDX23Q9BUQ8 820 aaKnown RBP8.79□□□□□ -1
VPS29-203ENST00000546588 SELENOOQ9BVL4 669 aa8.79□□□□□ -1
VPS29-203ENST00000546588 GOLPH3Q9H4A6 298 aa8.79□□□□□ -1
VPS29-203ENST00000546588 DMAP1Q9NPF5 467 aaPredicted RBP8.79□□□□□ -1
VPS29-203ENST00000546588 TMLHEQ9NVH6 421 aa8.79□□□□□ -1
VPS29-203ENST00000546588 RRN3Q9NYV6 651 aa8.79□□□□□ -1
VPS29-203ENST00000546588 POLR3KQ9Y2Y1 108 aaPredicted RBP8.79□□□□□ -1
VPS29-203ENST00000546588 hCG_2014768A0A024R1R8 64 aa8.78□□□□□ -1
VPS29-203ENST00000546588 C9orf172C9J069 976 aa8.78□□□□□ -1
VPS29-203ENST00000546588 C5orf67F2Z3F1 127 aa8.78□□□□□ -1
VPS29-203ENST00000546588 CCDC188H7C350 402 aa8.78□□□□□ -1
VPS29-203ENST00000546588 I3L4J1 428 aa8.78□□□□□ -1
VPS29-203ENST00000546588 PGRMC1O00264 195 aaKnown RBP8.78□□□□□ -1
VPS29-203ENST00000546588 FSCN2O14926 492 aa8.78□□□□□ -1
VPS29-203ENST00000546588 PDPK1O15530 556 aa8.78□□□□□ -1
VPS29-203ENST00000546588 NCK2O43639 380 aa8.78□□□□□ -1
VPS29-203ENST00000546588 SRGAP2O75044 1071 aa8.78□□□□□ -1
VPS29-203ENST00000546588 TADA2AO75478 443 aa8.78□□□□□ -1
VPS29-203ENST00000546588 PAPLNO95428 1278 aa8.78□□□□□ -1
VPS29-203ENST00000546588 VNN2O95498 520 aa8.78□□□□□ -1
VPS29-203ENST00000546588 IGLV3-25P01717 112 aa8.78□□□□□ -1
VPS29-203ENST00000546588 ALDH7A1P49419 539 aaKnown RBP8.78□□□□□ -1
VPS29-203ENST00000546588 CACNA2D1P54289 1103 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms