RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 PADI3Q9ULW8 664 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 EP400Q96L91 3159 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 E2F8A0AVK6 867 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 SPTLC1O15269 473 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 DIAPH2O60879 1101 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 USP12O75317 370 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 METTL18O95568 372 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 ZNF865P0CJ78 1059 aaPredicted RBP11.06□□□□□ -0.64
CLIP1-213ENST00000540338 BRCC3P46736 316 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 ELF3P78545 371 aaPredicted RBP11.06□□□□□ -0.64
CLIP1-213ENST00000540338 IRF5Q13568 498 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 OSTM1Q86WC4 334 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 ZNF398Q8TD17 642 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 SLC9A7Q96T83 725 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 PSME4Q14997 1843 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 ARL5CA6NH57 179 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 H0Y3Z8 333 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 CYP2C18P33260 490 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 NPY2RP49146 381 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 ALDH18A1P54886 795 aaKnown RBP11.06□□□□□ -0.64
CLIP1-213ENST00000540338 SLC20A2Q08357 652 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 RAB6CQ53S08 254 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 CLEC20AQ6ZU45 233 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 STKLD1Q8NE28 680 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 PTPRN2Q92932 1015 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 UROC1Q96N76 676 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 COLEC11Q9BWP8 271 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 RAB6CQ9H0N0 254 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 GNEQ9Y223 722 aaKnown RBP11.06□□□□□ -0.64
CLIP1-213ENST00000540338 RAD54BQ9Y620 910 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 ZNF487B1APH4 448 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 E7ESA3 106 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 TIMM44O43615 452 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 PMPCBO75439 489 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 CAPN15O75808 1086 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 GEMP55040 296 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 DAOAP59103 153 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 TUSC3Q13454 348 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 IFNL1Q8IU54 200 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 LZTR1Q8N653 840 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 OR52K1Q8NGK4 314 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 TMEM40Q8WWA1 233 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 MAGEB5Q9BZ81 275 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 USP29Q9HBJ7 922 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 ABCC13Q9NSE7 274 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 ZNF180Q9UJW8 692 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 SLC39A10Q9ULF5 831 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 TEX264Q9Y6I9 313 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 FAM155BO75949 473 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 UNC5CO95185 931 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 ENO1P06733 434 aaKnown RBP11.05□□□□□ -0.64
CLIP1-213ENST00000540338 PFKMP08237 780 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 LRPAP1P30533 357 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 SERPINB8P50452 374 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 SOX4Q06945 474 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-213ENST00000540338 CDH17Q12864 832 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 GRIK3Q13003 919 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 FSCBQ5H9T9 825 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 GRTP1Q5TC63 336 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 LRRC8BQ6P9F7 803 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 ECHDC2Q86YB7 292 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 BANPQ8N9N5 519 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 DCAKDQ8WVC6 231 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 KCTD13Q8WZ19 329 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 PABPC5Q96DU9 382 aaKnown RBP11.05□□□□□ -0.64
CLIP1-213ENST00000540338 KCNK16Q96T55 309 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 PTPN18Q99952 460 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 CCDC68Q9H2F9 335 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 GTF2IRD1Q9UHL9 959 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 FER1L6Q2WGJ9 1857 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 ATP6V1G2O95670 118 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 ARL1P40616 181 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-213ENST00000540338 MPP3Q13368 585 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 ZBTB6Q15916 424 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 N4BP2L1Q5TBK1 243 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-213ENST00000540338 SYPL2Q5VXT5 272 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 TIGD7Q6NT04 549 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-213ENST00000540338 KLC3Q6P597 504 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 KYAT3Q6YP21 454 aaKnown RBP11.05□□□□□ -0.64
CLIP1-213ENST00000540338 FITM2Q8N6M3 262 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 KANSL3Q9P2N6 904 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 KIAA1217Q5T5P2 1943 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 YJEFN3A6XGL0 299 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 E7ENQ6 273 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 TPH1P17752 444 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 TFE3P19532 575 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-213ENST00000540338 KDSRQ06136 332 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 FASTKD1Q53R41 847 aaKnown RBP11.05□□□□□ -0.64
CLIP1-213ENST00000540338 MORN1Q5T089 497 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 FAM182AQ5T1J6 154 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 NCBP2-AS2Q69YL0 99 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 DCLRE1AQ6PJP8 1040 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 SUGP1Q8IWZ8 645 aaKnown RBP11.05□□□□□ -0.64
CLIP1-213ENST00000540338 OR6P1Q8NGX9 317 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 SCG3Q8WXD2 468 aaKnown RBP11.05□□□□□ -0.64
CLIP1-213ENST00000540338 CPNE1Q99829 537 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 C12orf65Q9H3J6 166 aaKnown RBP11.05□□□□□ -0.64
CLIP1-213ENST00000540338 TASP1Q9H6P5 420 aa11.05□□□□□ -0.64
CLIP1-213ENST00000540338 KAT6AQ92794 2004 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 BAG2O95816 211 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms