RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 JMJD7P0C870 316 aa9.59□□□□□ -0.87
USP28-205ENST00000537706 RALAP11233 206 aa9.59□□□□□ -0.87
USP28-205ENST00000537706 GOT1P17174 413 aa9.59□□□□□ -0.87
USP28-205ENST00000537706 POLR2EP19388 210 aaKnown RBP9.59□□□□□ -0.87
USP28-205ENST00000537706 ZNF177Q13360 481 aaPredicted RBP9.59□□□□□ -0.87
USP28-205ENST00000537706 CST6Q15828 149 aa9.59□□□□□ -0.87
USP28-205ENST00000537706 C10orf120Q5SQS8 335 aa9.59□□□□□ -0.87
USP28-205ENST00000537706 ZCCHC8Q6NZY4 707 aaKnown RBP9.59□□□□□ -0.87
USP28-205ENST00000537706 AHI1Q8N157 1196 aa9.59□□□□□ -0.87
USP28-205ENST00000537706 SMARCD1Q96GM5 515 aa9.59□□□□□ -0.87
USP28-205ENST00000537706 LARP6Q9BRS8 491 aaKnown RBP9.59□□□□□ -0.87
USP28-205ENST00000537706 FAM213AQ9BRX8 229 aa9.59□□□□□ -0.87
USP28-205ENST00000537706 ZHX3Q9H4I2 956 aa9.59□□□□□ -0.87
USP28-205ENST00000537706 RBAKQ9NYW8 714 aaPredicted RBP9.59□□□□□ -0.87
USP28-205ENST00000537706 EXOC7Q9UPT5 735 aa9.59□□□□□ -0.87
USP28-205ENST00000537706 STYXL1Q9Y6J8 313 aa9.59□□□□□ -0.87
USP28-205ENST00000537706 SLC12A8A0AV02 714 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 FAM92AA1XBS5 289 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 A8MXQ7 604 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 PRAMEF26H0Y7S4 382 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 H3BM21 787 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 NOBOXO60393 691 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 RNGTTO60942 597 aaKnown RBP9.58□□□□□ -0.88
USP28-205ENST00000537706 TBCAO75347 108 aaKnown RBP9.58□□□□□ -0.88
USP28-205ENST00000537706 PIAS2O75928 621 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 STC2O76061 302 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 TBX18O95935 607 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 DLDP09622 509 aaKnown RBP9.58□□□□□ -0.88
USP28-205ENST00000537706 CD82P27701 267 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 ATP1A2P50993 1020 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 CACNA2D1P54289 1103 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 TNNC1P63316 161 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 KLRB1Q12918 225 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 NR0B2Q15466 257 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 MPPE1Q53F39 396 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 SETMARQ53H47 684 aaPredicted RBP9.58□□□□□ -0.88
USP28-205ENST00000537706 LIMS2Q7Z4I7 341 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 VASH2Q86V25 355 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 IGSF22Q8N9C0 903 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 B3GALNT2Q8NCR0 500 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 NAT6Q93015 286 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 B3GNT5Q9BYG0 378 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 UPF2Q9HAU5 1272 aaKnown RBP9.58□□□□□ -0.88
USP28-205ENST00000537706 EPB41L5Q9HCM4 733 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 UCKL1Q9NWZ5 548 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 CLDN5O00501 218 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 SCAMP1O15126 338 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 NVLO15381 856 aaKnown RBP9.58□□□□□ -0.88
USP28-205ENST00000537706 MTSS1O43312 755 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 TACC1O75410 805 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 ADH1BP00325 375 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 PLA2G4BP0C869 781 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 RARGP13631 454 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 SLC8A1P32418 973 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 UGT1A5P35504 534 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 ZNF445P59923 1031 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 HNRNPKP61978 463 aaKnown RBP eCLIP9.58□□□□□ -0.88
USP28-205ENST00000537706 CYP4F2P78329 520 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 GTF2BQ00403 316 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 SRSF6Q13247 344 aaKnown RBP9.58□□□□□ -0.88
USP28-205ENST00000537706 KCNJ12Q14500 433 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 CDKN3Q16667 212 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 TMEM215Q68D42 235 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 RAB11FIP2Q7L804 512 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 FAM35AQ86V20 835 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 CPXM2Q8N436 756 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 ZNF557Q8N988 423 aaPredicted RBP9.58□□□□□ -0.88
USP28-205ENST00000537706 IFT43Q96FT9 208 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 MTMR12Q9C0I1 747 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 ZSWIM6Q9HCJ5 1215 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 PDRG1Q9NUG6 133 aa9.58□□□□□ -0.88
USP28-205ENST00000537706 K7ESM1 405 aa9.57□□□□□ -0.88
USP28-205ENST00000537706 LATO43561 262 aa9.57□□□□□ -0.88
USP28-205ENST00000537706 AP1G2O75843 785 aa9.57□□□□□ -0.88
USP28-205ENST00000537706 TRIM21P19474 475 aaKnown RBP9.57□□□□□ -0.88
USP28-205ENST00000537706 C5AR1P21730 350 aa9.57□□□□□ -0.88
USP28-205ENST00000537706 CORO1AP31146 461 aaKnown RBP9.57□□□□□ -0.88
USP28-205ENST00000537706 SLC6A4P31645 630 aa9.57□□□□□ -0.88
USP28-205ENST00000537706 ADPRHP54922 357 aa9.57□□□□□ -0.88
USP28-205ENST00000537706 KCNMA1Q12791 1236 aa9.57□□□□□ -0.88
USP28-205ENST00000537706 SURF1Q15526 300 aa9.57□□□□□ -0.88
USP28-205ENST00000537706 LACTB2Q53H82 288 aaPredicted RBP9.57□□□□□ -0.88
USP28-205ENST00000537706 BMP2KLQ5H9B9 411 aa9.57□□□□□ -0.88
USP28-205ENST00000537706 MBLAC2Q68D91 279 aa9.57□□□□□ -0.88
USP28-205ENST00000537706 CRELD2Q6UXH1 353 aaPredicted RBP9.57□□□□□ -0.88
USP28-205ENST00000537706 GALNT11Q8NCW6 608 aa9.57□□□□□ -0.88
USP28-205ENST00000537706 NOC3LQ8WTT2 800 aaKnown RBP9.57□□□□□ -0.88
USP28-205ENST00000537706 HTR3CQ8WXA8 447 aa9.57□□□□□ -0.88
USP28-205ENST00000537706 HVCN1Q96D96 273 aa9.57□□□□□ -0.88
USP28-205ENST00000537706 KCNK16Q96T55 309 aa9.57□□□□□ -0.88
USP28-205ENST00000537706 ZNF71Q9NQZ8 489 aaPredicted RBP9.57□□□□□ -0.88
USP28-205ENST00000537706 SIX4Q9UIU6 781 aa9.57□□□□□ -0.88
USP28-205ENST00000537706 GGA2Q9UJY4 613 aa9.57□□□□□ -0.88
USP28-205ENST00000537706 ATMQ13315 3056 aa9.57□□□□□ -0.88
USP28-205ENST00000537706 KNL1Q8NG31 2342 aa9.57□□□□□ -0.88
USP28-205ENST00000537706 NPHP3-ACAD11A0A0J9YXS1 232 aa9.56□□□□□ -0.88
USP28-205ENST00000537706 PFKFB2O60825 505 aa9.56□□□□□ -0.88
USP28-205ENST00000537706 PABPC1P11940 636 aaKnown RBP9.56□□□□□ -0.88
USP28-205ENST00000537706 PSEN1P49768 467 aa9.56□□□□□ -0.88
USP28-205ENST00000537706 SLC12A3P55017 1021 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms