RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 GP5P40197 560 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 LHX1P48742 406 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 CACNA2D1P54289 1103 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 CSNK2BP67870 215 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 GRIK3Q13003 919 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 MTA1Q13330 715 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 CCDC153Q494R4 210 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 HLA-DQA1Q5Y7H0 255 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 PRR5LQ6MZQ0 368 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 TMEM159Q96B96 161 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 FAM136AQ96C01 138 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 MCRS1Q96EZ8 462 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 CGRRF1Q99675 332 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 KIFC1Q9BW19 673 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 PCDH9Q9HC56 1237 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 GALNT8Q9NY28 637 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 RABGEF1Q9UJ41 708 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 VANGL2Q9ULK5 521 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 A0A0A6YYK5 440 aaPredicted RBP10.88□□□□□ -0.67
CLIP1-209ENST00000537178 TRIM43BA6NCK2 446 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 MYL12BO14950 172 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 ATP9AO75110 1047 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 ECDO95905 644 aaPredicted RBP10.88□□□□□ -0.67
CLIP1-209ENST00000537178 RENBPP51606 427 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 PPIDQ08752 370 aaKnown RBP10.88□□□□□ -0.67
CLIP1-209ENST00000537178 ELAVL2Q12926 359 aaKnown RBP10.88□□□□□ -0.67
CLIP1-209ENST00000537178 SLC25A24Q6NUK1 477 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 KLHL24Q6TFL4 600 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 CDH24Q86UP0 819 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 REXO1L1PQ8IX06 675 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 FAM126BQ8IXS8 530 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 CACTIN-AS1Q8N1I8 211 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 STARD8Q92502 1023 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 FIG4Q92562 907 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 ATG4CQ96DT6 458 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 FUT8Q9BYC5 575 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 REXO4Q9GZR2 422 aaKnown RBP10.88□□□□□ -0.67
CLIP1-209ENST00000537178 NT5MQ9NPB1 228 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 KLHL1Q9NR64 748 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 PLA2G4CQ9UP65 541 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 LRCH1Q9Y2L9 728 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 AP3M1Q9Y2T2 418 aa10.88□□□□□ -0.67
CLIP1-209ENST00000537178 H3BN98 237 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 CD3EAPO15446 510 aaKnown RBP10.87□□□□□ -0.67
CLIP1-209ENST00000537178 URODP06132 367 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 VAV1P15498 845 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 HOXB8P17481 243 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-209ENST00000537178 ALDH9A1P49189 494 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 EFEMP1Q12805 493 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 CDH17Q12864 832 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 MARC1Q5VT66 337 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 KLHL17Q6TDP4 642 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 MOXD1Q6UVY6 613 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 PEG10Q86TG7 708 aaKnown RBP10.87□□□□□ -0.67
CLIP1-209ENST00000537178 STK32CQ86UX6 486 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 ADGRF2Q8IZF7 708 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 DAGLBQ8NCG7 672 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 MAGEB10Q96LZ2 347 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-209ENST00000537178 MTMR12Q9C0I1 747 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 RBM22Q9NW64 420 aaKnown RBP eCLIP10.87□□□□□ -0.672e-7■■■□□ 15.8
CLIP1-209ENST00000537178 GPATCH2LQ9NWQ4 482 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 CYP1A1P04798 512 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-209ENST00000537178 ZNF7P17097 686 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-209ENST00000537178 RRM1P23921 792 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 YY1P25490 414 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 SKP1P63208 163 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 CTXN3Q4LDR2 81 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 HERC6Q8IVU3 1022 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 FBXO39Q8N4B4 442 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 TBCBQ99426 244 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 TMEM121Q9BTD3 319 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 RRN3Q9NYV6 651 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 DPP7Q9UHL4 492 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 ATP6V1HQ9UI12 483 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 ATP5BP06576 529 aaKnown RBP10.87□□□□□ -0.67
CLIP1-209ENST00000537178 GHRP10912 638 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 WARSP23381 471 aaKnown RBP10.87□□□□□ -0.67
CLIP1-209ENST00000537178 THPOP40225 353 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 MAPKAPK2P49137 400 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 PKN1Q16512 942 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 AMHR2Q16671 573 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 CBWD3Q5JTY5 395 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 CBWD5Q5RIA9 395 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 COMMD2Q86X83 199 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 SYTL1Q8IYJ3 562 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 IZUMO1Q8IYV9 350 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 DHRSXQ8N5I4 330 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 NKX2-3Q8TAU0 364 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 ACTL9Q8TC94 416 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 ACTRT2Q8TDY3 377 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 S100A13Q99584 98 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 CIPCQ9C0C6 399 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 PIGUQ9H490 435 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 NEK6Q9HC98 313 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 HACL1Q9UJ83 578 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 MYRFQ9Y2G1 1151 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 SNX8Q9Y5X2 465 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 MSH4O15457 936 aa10.87□□□□□ -0.67
CLIP1-209ENST00000537178 CCNT2O60583 730 aaKnown RBP10.87□□□□□ -0.67
CLIP1-209ENST00000537178 VPS4BO75351 444 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms