RNA–Protein interactions for RNA: ENST00000535906.1

VPS33B-202, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2 BASIC

Gene VPS33B, Length 2,420 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-202ENST00000535906 SF3B1O75533 1304 aaKnown RBP eCLIP13.77□□□□□ -0.28e-6■■■■■ 107
VPS33B-202ENST00000535906 TRIM49D1C9J1S8 452 aa13.77□□□□□ -0.21
VPS33B-202ENST00000535906 CSH1P0DML2 217 aa13.77□□□□□ -0.21
VPS33B-202ENST00000535906 CSH2P0DML3 217 aa13.77□□□□□ -0.21
VPS33B-202ENST00000535906 ERCC2P18074 760 aa13.77□□□□□ -0.21
VPS33B-202ENST00000535906 FDFT1P37268 417 aa13.77□□□□□ -0.21
VPS33B-202ENST00000535906 NEK3P51956 506 aa13.77□□□□□ -0.21
VPS33B-202ENST00000535906 WASHC5Q12768 1159 aa13.77□□□□□ -0.21
VPS33B-202ENST00000535906 SEMA3BQ13214 749 aa13.77□□□□□ -0.21
VPS33B-202ENST00000535906 DSC3Q14574 896 aa13.77□□□□□ -0.21
VPS33B-202ENST00000535906 PDK1Q15118 436 aa13.77□□□□□ -0.21
VPS33B-202ENST00000535906 SPDYAQ5MJ70 313 aa13.77□□□□□ -0.21
VPS33B-202ENST00000535906 TTC39BQ5VTQ0 682 aaPredicted RBP13.77□□□□□ -0.21
VPS33B-202ENST00000535906 FYB2Q5VWT5 728 aa13.77□□□□□ -0.21
VPS33B-202ENST00000535906 CCSAPQ6IQ19 270 aaPredicted RBP13.77□□□□□ -0.21
VPS33B-202ENST00000535906 GSDMBQ8TAX9 411 aa13.77□□□□□ -0.21
VPS33B-202ENST00000535906 ZNF398Q8TD17 642 aa13.77□□□□□ -0.21
VPS33B-202ENST00000535906 ADAM2Q99965 735 aa13.77□□□□□ -0.21
VPS33B-202ENST00000535906 LRMDAQ9H2I8 198 aa13.77□□□□□ -0.21
VPS33B-202ENST00000535906 ALG13Q9NP73 1137 aaKnown RBP13.77□□□□□ -0.21
VPS33B-202ENST00000535906 TMLHEQ9NVH6 421 aa13.77□□□□□ -0.21
VPS33B-202ENST00000535906 PIH1D1Q9NWS0 290 aaKnown RBP13.77□□□□□ -0.21
VPS33B-202ENST00000535906 TDRD15B5MCY1 1934 aaKnown RBP13.77□□□□□ -0.21
VPS33B-202ENST00000535906 ODC1P11926 461 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 BDNFP23560 247 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 CCND1P24385 295 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 ETV4P43268 484 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 CRADDP78560 199 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 SCAPQ12770 1279 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 FAM171BQ6P995 826 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 ZNF567Q8N184 647 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 KLHDC9Q8NEP7 349 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 NTAN1Q96AB6 310 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 PGAP3Q96FM1 320 aaPredicted RBP13.76□□□□□ -0.21
VPS33B-202ENST00000535906 APOPT1Q96IL0 206 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 TMEM209Q96SK2 561 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 COLEC11Q9BWP8 271 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 EBF2Q9HAK2 575 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 TRMT13Q9NUP7 481 aaKnown RBP13.76□□□□□ -0.21
VPS33B-202ENST00000535906 ZNF180Q9UJW8 692 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 INPP5FQ9Y2H2 1132 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 A8MUI8 341 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 F8W810 466 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 C2CD2LO14523 706 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 OPHN1O60890 802 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 ITGB1P05556 798 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 SNRPAP09012 282 aaKnown RBP13.76□□□□□ -0.21
VPS33B-202ENST00000535906 GSTA2P09210 222 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 PSMB4P28070 264 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 AIF1P55008 147 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 PARP6Q2NL67 630 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 CDHR3Q6ZTQ4 885 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 LRRTM3Q86VH5 581 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 UNC5BQ8IZJ1 945 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 INPP5DQ92835 1189 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 PTPRN2Q92932 1015 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 OXNAD1Q96HP4 312 aaPredicted RBP13.76□□□□□ -0.21
VPS33B-202ENST00000535906 FAM111AQ96PZ2 611 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 ACBD6Q9BR61 282 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 PCDHA11Q9Y5I1 949 aa13.76□□□□□ -0.21
VPS33B-202ENST00000535906 WDR27A2RRH5 827 aa13.75□□□□□ -0.21
VPS33B-202ENST00000535906 FAM159BA6NKW6 160 aa13.75□□□□□ -0.21
VPS33B-202ENST00000535906 KCNK1O00180 336 aa13.75□□□□□ -0.21
VPS33B-202ENST00000535906 PPP1R12AO14974 1030 aaPredicted RBP13.75□□□□□ -0.21
VPS33B-202ENST00000535906 KRT37O76014 449 aa13.75□□□□□ -0.21
VPS33B-202ENST00000535906 DHRS4L1P0CG22 281 aa13.75□□□□□ -0.21
VPS33B-202ENST00000535906 ELNP15502 786 aa13.75□□□□□ -0.21
VPS33B-202ENST00000535906 TARSP26639 723 aaKnown RBP13.75□□□□□ -0.21
VPS33B-202ENST00000535906 RAB27AP51159 221 aa13.75□□□□□ -0.21
VPS33B-202ENST00000535906 SARNPP82979 210 aaKnown RBP13.75□□□□□ -0.21
VPS33B-202ENST00000535906 CDK16Q00536 496 aa13.75□□□□□ -0.21
VPS33B-202ENST00000535906 BMPR2Q13873 1038 aa13.75□□□□□ -0.21
VPS33B-202ENST00000535906 OR10T2Q8NGX3 314 aa13.75□□□□□ -0.21
VPS33B-202ENST00000535906 UTP4Q969X6 686 aaKnown RBP13.75□□□□□ -0.21
VPS33B-202ENST00000535906 MANSC1Q9H8J5 431 aa13.75□□□□□ -0.21
VPS33B-202ENST00000535906 MOCS1Q9NZB8 636 aa13.75□□□□□ -0.21
VPS33B-202ENST00000535906 L3MBTL1Q9Y468 752 aa13.75□□□□□ -0.21
VPS33B-202ENST00000535906 SNX10Q9Y5X0 201 aa13.75□□□□□ -0.21
VPS33B-202ENST00000535906 HMX2A2RU54 273 aa13.75□□□□□ -0.21
VPS33B-202ENST00000535906 STK10O94804 968 aaKnown RBP13.75□□□□□ -0.21
VPS33B-202ENST00000535906 CYP11A1P05108 521 aa13.75□□□□□ -0.21
VPS33B-202ENST00000535906 RPLP2P05387 115 aaKnown RBP13.75□□□□□ -0.21
VPS33B-202ENST00000535906 TROVE2P10155 538 aaKnown RBP eCLIP13.75□□□□□ -0.21
VPS33B-202ENST00000535906 PRKAR2AP13861 404 aaKnown RBP13.75□□□□□ -0.21
VPS33B-202ENST00000535906 TPI1P60174 286 aa13.75□□□□□ -0.21
VPS33B-202ENST00000535906 INTS6LQ5JSJ4 861 aaKnown RBP13.75□□□□□ -0.21
VPS33B-202ENST00000535906 LRRC8BQ6P9F7 803 aa13.75□□□□□ -0.21
VPS33B-202ENST00000535906 NLRP9Q7RTR0 991 aa13.75□□□□□ -0.21
VPS33B-202ENST00000535906 NPWQ8N729 165 aa13.75□□□□□ -0.21
VPS33B-202ENST00000535906 STAMBPL1Q96FJ0 436 aa13.75□□□□□ -0.21
VPS33B-202ENST00000535906 TMEM237Q96Q45 408 aa13.75□□□□□ -0.21
VPS33B-202ENST00000535906 PKMYT1Q99640 499 aa13.75□□□□□ -0.21
VPS33B-202ENST00000535906 NPHS2Q9NP85 383 aa13.75□□□□□ -0.21
VPS33B-202ENST00000535906 HAO1Q9UJM8 370 aa13.75□□□□□ -0.21
VPS33B-202ENST00000535906 ABT1Q9ULW3 272 aaKnown RBP13.75□□□□□ -0.21
VPS33B-202ENST00000535906 NUP205Q92621 2012 aa13.75□□□□□ -0.21
VPS33B-202ENST00000535906 TMEM88BA6NKF7 163 aa13.74□□□□□ -0.21
VPS33B-202ENST00000535906 M0QZQ0 153 aa13.74□□□□□ -0.21
VPS33B-202ENST00000535906 RFPL1O75677 317 aa13.74□□□□□ -0.21
VPS33B-202ENST00000535906 T-ENOLP0DO92 83 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms