RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 GOT1P17174 413 aa21.91■■□□□ 1.1
VPS28-212ENST00000530836 SEMA3BQ13214 749 aa21.91■■□□□ 1.1
VPS28-212ENST00000530836 RFX8Q6ZV50 586 aa21.91■■□□□ 1.1
VPS28-212ENST00000530836 HDXQ7Z353 690 aa21.91■■□□□ 1.1
VPS28-212ENST00000530836 ZNF707Q96C28 371 aaPredicted RBP21.91■■□□□ 1.1
VPS28-212ENST00000530836 DPH5Q9H2P9 285 aa21.91■■□□□ 1.1
VPS28-212ENST00000530836 WHRNQ9P202 907 aa21.91■■□□□ 1.1
VPS28-212ENST00000530836 UXTQ9UBK9 157 aaPredicted RBP21.91■■□□□ 1.1
VPS28-212ENST00000530836 ASIC3Q9UHC3 531 aa21.91■■□□□ 1.1
VPS28-212ENST00000530836 NEU2Q9Y3R4 380 aa21.91■■□□□ 1.1
VPS28-212ENST00000530836 CFAP69A5D8W1 941 aa21.9■■□□□ 1.1
VPS28-212ENST00000530836 ITIH2P19823 946 aa21.9■■□□□ 1.1
VPS28-212ENST00000530836 PGFP49763 221 aa21.9■■□□□ 1.1
VPS28-212ENST00000530836 EPHB3P54753 998 aa21.9■■□□□ 1.1
VPS28-212ENST00000530836 CALCOCO2Q13137 446 aa21.9■■□□□ 1.1
VPS28-212ENST00000530836 XRCC4Q13426 336 aa21.9■■□□□ 1.1
VPS28-212ENST00000530836 MTMR3Q13615 1198 aa21.9■■□□□ 1.1
VPS28-212ENST00000530836 TAF12Q16514 161 aa21.9■■□□□ 1.1
VPS28-212ENST00000530836 CES5AQ6NT32 575 aa21.9■■□□□ 1.1
VPS28-212ENST00000530836 PDZD4Q76G19 769 aaPredicted RBP21.9■■□□□ 1.1
VPS28-212ENST00000530836 GPR149Q86SP6 731 aa21.9■■□□□ 1.1
VPS28-212ENST00000530836 ITIH5Q86UX2 942 aa21.9■■□□□ 1.1
VPS28-212ENST00000530836 PYROXD2Q8N2H3 581 aa21.9■■□□□ 1.1
VPS28-212ENST00000530836 STKLD1Q8NE28 680 aa21.9■■□□□ 1.1
VPS28-212ENST00000530836 FAM118BQ9BPY3 351 aa21.9■■□□□ 1.1
VPS28-212ENST00000530836 SFMBT1Q9UHJ3 866 aa21.9■■□□□ 1.1
VPS28-212ENST00000530836 MAGED2Q9UNF1 606 aaPredicted RBP21.9■■□□□ 1.1
VPS28-212ENST00000530836 CREB3O43889 395 aa21.89■■□□□ 1.09
VPS28-212ENST00000530836 POU2F2P09086 479 aa21.89■■□□□ 1.09
VPS28-212ENST00000530836 RBP3P10745 1247 aa21.89■■□□□ 1.09
VPS28-212ENST00000530836 CAV1Q03135 178 aa21.89■■□□□ 1.09
VPS28-212ENST00000530836 RSAD2Q8WXG1 361 aa21.89■■□□□ 1.09
VPS28-212ENST00000530836 TRIM31Q9BZY9 425 aa21.89■■□□□ 1.09
VPS28-212ENST00000530836 ARHGEF4Q9NR80 690 aa21.89■■□□□ 1.09
VPS28-212ENST00000530836 SAE1Q9UBE0 346 aaPredicted RBP21.89■■□□□ 1.09
VPS28-212ENST00000530836 OR12D3Q9UGF7 316 aa21.89■■□□□ 1.09
VPS28-212ENST00000530836 SLC12A6Q9UHW9 1150 aa21.89■■□□□ 1.09
VPS28-212ENST00000530836 SNX24Q9Y343 169 aa21.89■■□□□ 1.09
VPS28-212ENST00000530836 ASB3Q9Y575 518 aa21.89■■□□□ 1.09
VPS28-212ENST00000530836 RAD54BQ9Y620 910 aa21.89■■□□□ 1.09
VPS28-212ENST00000530836 GREB1Q4ZG55 1949 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 KRT14P02533 472 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 LRG1P02750 347 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 PECAM1P16284 738 aaPredicted RBP21.88■■□□□ 1.09
VPS28-212ENST00000530836 TPI1P60174 286 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 TWF1Q12792 350 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 SMAD4Q13485 552 aaKnown RBP21.88■■□□□ 1.09
VPS28-212ENST00000530836 DPYSQ14117 519 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 TRIP4Q15650 581 aaPredicted RBP21.88■■□□□ 1.09
VPS28-212ENST00000530836 AAK1Q2M2I8 961 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 PUS10Q3MIT2 529 aaKnown RBP21.88■■□□□ 1.09
VPS28-212ENST00000530836 KLHDC10Q6PID8 442 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 SNF8Q96H20 258 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 SLC39A13Q96H72 371 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 ZNF512Q96ME7 567 aaPredicted RBP21.88■■□□□ 1.09
VPS28-212ENST00000530836 PCDH9Q9HC56 1237 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 ZNF446Q9NWS9 450 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 KCNU1A8MYU2 1149 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 SGK1O00141 431 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 CCL16O15467 120 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 MBTPS2O43462 519 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 XYLBO75191 536 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 SEC31AO94979 1220 aaKnown RBP21.88■■□□□ 1.09
VPS28-212ENST00000530836 HMGA1P17096 107 aaKnown RBP21.88■■□□□ 1.09
VPS28-212ENST00000530836 ADCY8P40145 1251 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 RPL21P46778 160 aaKnown RBP21.88■■□□□ 1.09
VPS28-212ENST00000530836 TUBP50607 506 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 TBX4P57082 545 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 NRG1Q02297 640 aaPredicted RBP21.88■■□□□ 1.09
VPS28-212ENST00000530836 RING1Q06587 406 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 TRADDQ15628 312 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 ATAT1Q5SQI0 421 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 C10orf120Q5SQS8 335 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 C1orf228Q6PIY5 440 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 DDX42Q86XP3 938 aaKnown RBP eCLIP21.88■■□□□ 1.09
VPS28-212ENST00000530836 ATXN2LQ8WWM7 1075 aaKnown RBP21.88■■□□□ 1.09
VPS28-212ENST00000530836 SUSD6Q92537 303 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 SMG7Q92540 1137 aaKnown RBP21.88■■□□□ 1.09
VPS28-212ENST00000530836 C1orf74Q96LT6 269 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 TMEM121Q9BTD3 319 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 TSPYL1Q9H0U9 437 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 ANLNQ9NQW6 1124 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 TRPM5Q9NZQ8 1165 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 MARCH2Q9P0N8 246 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 MTRF1LQ9UGC7 380 aaKnown RBP21.88■■□□□ 1.09
VPS28-212ENST00000530836 HEY1Q9Y5J3 304 aa21.88■■□□□ 1.09
VPS28-212ENST00000530836 BCLAF3A2AJT9 711 aaKnown RBP21.87■■□□□ 1.09
VPS28-212ENST00000530836 GRXCR2A6NFK2 248 aa21.87■■□□□ 1.09
VPS28-212ENST00000530836 HACD1B0YJ81 288 aa21.87■■□□□ 1.09
VPS28-212ENST00000530836 TLR5O60602 858 aa21.87■■□□□ 1.09
VPS28-212ENST00000530836 APOEP02649 317 aa21.87■■□□□ 1.09
VPS28-212ENST00000530836 AMPD1P23109 780 aa21.87■■□□□ 1.09
VPS28-212ENST00000530836 ECHS1P30084 290 aa21.87■■□□□ 1.09
VPS28-212ENST00000530836 PAFAH1B3Q15102 231 aaKnown RBP21.87■■□□□ 1.09
VPS28-212ENST00000530836 NCBP2-AS2Q69YL0 99 aa21.87■■□□□ 1.09
VPS28-212ENST00000530836 DARS2Q6PI48 645 aaKnown RBP21.87■■□□□ 1.09
VPS28-212ENST00000530836 NPNTQ6UXI9 565 aa21.87■■□□□ 1.09
VPS28-212ENST00000530836 CDKL3Q8IVW4 592 aaPredicted RBP21.87■■□□□ 1.09
VPS28-212ENST00000530836 GSPT2Q8IYD1 628 aaKnown RBP21.87■■□□□ 1.09
VPS28-212ENST00000530836 PSMG2Q969U7 264 aa21.87■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms