RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 ARHGEF18Q6ZSZ5 1173 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 RIBC1Q8N443 379 aaPredicted RBP21.34■■□□□ 1.01
VPS28-209ENST00000528142 ARHGEF2Q92974 986 aaKnown RBP21.34■■□□□ 1.01
VPS28-209ENST00000528142 CWH43Q9H720 699 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 RABGEF1Q9UJ41 708 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 NUDT5Q9UKK9 219 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 RNF103O00237 685 aa21.33■■□□□ 1.01
VPS28-209ENST00000528142 AVILO75366 819 aa21.33■■□□□ 1.01
VPS28-209ENST00000528142 UPP2O95045 317 aa21.33■■□□□ 1.01
VPS28-209ENST00000528142 EPHB2P29323 1055 aa21.33■■□□□ 1.01
VPS28-209ENST00000528142 CCR1P32246 355 aa21.33■■□□□ 1.01
VPS28-209ENST00000528142 PPP2R5DQ14738 602 aa21.33■■□□□ 1.01
VPS28-209ENST00000528142 C3orf62Q6ZUJ4 267 aa21.33■■□□□ 1.01
VPS28-209ENST00000528142 ARHGAP18Q8N392 663 aa21.33■■□□□ 1.01
VPS28-209ENST00000528142 CCNYQ8ND76 341 aa21.33■■□□□ 1.01
VPS28-209ENST00000528142 MDM1Q8TC05 714 aa21.33■■□□□ 1.01
VPS28-209ENST00000528142 MAML1Q92585 1016 aa21.33■■□□□ 1.01
VPS28-209ENST00000528142 TMEM39AQ9NV64 488 aa21.33■■□□□ 1.01
VPS28-209ENST00000528142 GMIPQ9P107 970 aa21.33■■□□□ 1.01
VPS28-209ENST00000528142 SLC27A5Q9Y2P5 690 aa21.33■■□□□ 1.01
VPS28-209ENST00000528142 KCNU1A8MYU2 1149 aa21.32■■□□□ 1
VPS28-209ENST00000528142 NCAM2O15394 837 aa21.32■■□□□ 1
VPS28-209ENST00000528142 OPHN1O60890 802 aa21.32■■□□□ 1
VPS28-209ENST00000528142 SOAT2O75908 522 aa21.32■■□□□ 1
VPS28-209ENST00000528142 HAPLN1P10915 354 aaPredicted RBP21.32■■□□□ 1
VPS28-209ENST00000528142 EN2P19622 333 aaPredicted RBP21.32■■□□□ 1
VPS28-209ENST00000528142 PHBP35232 272 aa21.32■■□□□ 1
VPS28-209ENST00000528142 PPARDQ03181 441 aa21.32■■□□□ 1
VPS28-209ENST00000528142 RASA2Q15283 850 aa21.32■■□□□ 1
VPS28-209ENST00000528142 PRSS55Q6UWB4 352 aaPredicted RBP21.32■■□□□ 1
VPS28-209ENST00000528142 ZNF534Q76KX8 674 aa21.32■■□□□ 1
VPS28-209ENST00000528142 TAOK1Q7L7X3 1001 aa21.32■■□□□ 1
VPS28-209ENST00000528142 UBE2Q1Q7Z7E8 422 aa21.32■■□□□ 1
VPS28-209ENST00000528142 RNF168Q8IYW5 571 aaPredicted RBP21.32■■□□□ 1
VPS28-209ENST00000528142 GPR152Q8TDT2 470 aa21.32■■□□□ 1
VPS28-209ENST00000528142 SPATA17Q96L03 361 aa21.32■■□□□ 1
VPS28-209ENST00000528142 PPCSQ9HAB8 311 aa21.32■■□□□ 1
VPS28-209ENST00000528142 TMEM51Q9NW97 253 aa21.32■■□□□ 1
VPS28-209ENST00000528142 SRRM3A6NNA2 597 aaPredicted RBP21.32■■□□□ 1
VPS28-209ENST00000528142 PAGE1O75459 146 aa21.32■■□□□ 1
VPS28-209ENST00000528142 ZNF189O75820 626 aaPredicted RBP21.32■■□□□ 1
VPS28-209ENST00000528142 YWHAQP27348 245 aa21.32■■□□□ 1
VPS28-209ENST00000528142 FDFT1P37268 417 aa21.32■■□□□ 1
VPS28-209ENST00000528142 MAGEA3P43357 314 aa21.32■■□□□ 1
VPS28-209ENST00000528142 ALDH7A1P49419 539 aaKnown RBP21.32■■□□□ 1
VPS28-209ENST00000528142 PPIDQ08752 370 aaKnown RBP21.32■■□□□ 1
VPS28-209ENST00000528142 GALNT2Q10471 571 aa21.32■■□□□ 1
VPS28-209ENST00000528142 MANEALQ5VSG8 457 aa21.32■■□□□ 1
VPS28-209ENST00000528142 DENND5BQ6ZUT9 1274 aa21.32■■□□□ 1
VPS28-209ENST00000528142 PALM2Q8IXS6 379 aa21.32■■□□□ 1
VPS28-209ENST00000528142 C2orf15Q8WU43 125 aaKnown RBP21.32■■□□□ 1
VPS28-209ENST00000528142 SERPINB11Q96P15 392 aa21.32■■□□□ 1
VPS28-209ENST00000528142 BRD8Q9H0E9 1235 aa21.32■■□□□ 1
VPS28-209ENST00000528142 FETUBQ9UGM5 382 aa21.32■■□□□ 1
VPS28-209ENST00000528142 CHMP2BQ9UQN3 213 aa21.32■■□□□ 1
VPS28-209ENST00000528142 FNDC1Q4ZHG4 1894 aaPredicted RBP21.31■■□□□ 1
VPS28-209ENST00000528142 TRIM43BA6NCK2 446 aa21.31■■□□□ 1
VPS28-209ENST00000528142 STK10O94804 968 aaKnown RBP21.31■■□□□ 1
VPS28-209ENST00000528142 HOXC13P31276 330 aa21.31■■□□□ 1
VPS28-209ENST00000528142 RFC2P35250 354 aa21.31■■□□□ 1
VPS28-209ENST00000528142 COLGALT1Q8NBJ5 622 aa21.31■■□□□ 1
VPS28-209ENST00000528142 TRIM43Q96BQ3 446 aaPredicted RBP21.31■■□□□ 1
VPS28-209ENST00000528142 CENPTQ96BT3 561 aa21.31■■□□□ 1
VPS28-209ENST00000528142 SLC39A13Q96H72 371 aa21.31■■□□□ 1
VPS28-209ENST00000528142 SELENOSQ9BQE4 189 aa21.31■■□□□ 1
VPS28-209ENST00000528142 FERMT1Q9BQL6 677 aa21.31■■□□□ 1
VPS28-209ENST00000528142 TMEM106CQ9BVX2 250 aa21.31■■□□□ 1
VPS28-209ENST00000528142 VN1R3Q9BXE9 311 aa21.31■■□□□ 1
VPS28-209ENST00000528142 ACSS3Q9H6R3 686 aa21.31■■□□□ 1
VPS28-209ENST00000528142 TBK1Q9UHD2 729 aa21.31■■□□□ 1
VPS28-209ENST00000528142 SLC24A2Q9UI40 661 aa21.31■■□□□ 1
VPS28-209ENST00000528142 FOXO6A8MYZ6 492 aa21.3■■□□□ 1
VPS28-209ENST00000528142 RTN3O95197 1032 aaPredicted RBP21.3■■□□□ 1
VPS28-209ENST00000528142 CLTBP09497 229 aa21.3■■□□□ 1
VPS28-209ENST00000528142 CREB1P16220 341 aa21.3■■□□□ 1
VPS28-209ENST00000528142 HTR7P34969 479 aa21.3■■□□□ 1
VPS28-209ENST00000528142 SERPINB6P35237 376 aa21.3■■□□□ 1
VPS28-209ENST00000528142 MGAT5BQ3V5L5 792 aa21.3■■□□□ 1
VPS28-209ENST00000528142 TADA2BQ86TJ2 420 aa21.3■■□□□ 1
VPS28-209ENST00000528142 ZNF567Q8N184 647 aa21.3■■□□□ 1
VPS28-209ENST00000528142 FBF1Q8TES7 1133 aa21.3■■□□□ 1
VPS28-209ENST00000528142 HDAC11Q96DB2 347 aa21.3■■□□□ 1
VPS28-209ENST00000528142 FCRL2Q96LA5 508 aaPredicted RBP21.3■■□□□ 1
VPS28-209ENST00000528142 SEPT5Q99719 369 aaPredicted RBP21.3■■□□□ 1
VPS28-209ENST00000528142 SIK2Q9H0K1 926 aa21.3■■□□□ 1
VPS28-209ENST00000528142 COMMD8Q9NX08 183 aa21.3■■□□□ 1
VPS28-209ENST00000528142 CLIC5Q9NZA1 410 aa21.3■■□□□ 1
VPS28-209ENST00000528142 MTRRQ9UBK8 725 aa21.3■■□□□ 1
VPS28-209ENST00000528142 TLR6Q9Y2C9 796 aa21.3■■□□□ 1
VPS28-209ENST00000528142 CDY1Q9Y6F8 540 aa21.3■■□□□ 1
VPS28-209ENST00000528142 POC1B-GALNT4F8VUJ3 575 aa21.29■■□□□ 1
VPS28-209ENST00000528142 ADAM12O43184 909 aa21.29■■□□□ 1
VPS28-209ENST00000528142 CHN1P15882 459 aa21.29■■□□□ 1
VPS28-209ENST00000528142 MX2P20592 715 aa21.29■■□□□ 1
VPS28-209ENST00000528142 DUSP4Q13115 394 aa21.29■■□□□ 1
VPS28-209ENST00000528142 ZSCAN26Q16670 478 aa21.29■■□□□ 1
VPS28-209ENST00000528142 PARP6Q2NL67 630 aa21.29■■□□□ 1
VPS28-209ENST00000528142 SLC8B1Q6J4K2 584 aa21.29■■□□□ 1
VPS28-209ENST00000528142 NECAB2Q7Z6G3 386 aa21.29■■□□□ 1
VPS28-209ENST00000528142 FBXO22Q8NEZ5 403 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms