RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 FBXL13Q8NEE6 735 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 KLHDC9Q8NEP7 349 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 GATA6Q92908 595 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 IQCDQ96DY2 449 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 SPAG5Q96R06 1193 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 FNBP1Q96RU3 617 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 APOL6Q9BWW8 343 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 NAA15Q9BXJ9 866 aaKnown RBP4.42□□□□□ -1.7
CD44-226ENST00000527889 NFKBIZQ9BYH8 718 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 LDHAL6BQ9BYZ2 381 aaPredicted RBP4.42□□□□□ -1.7
CD44-226ENST00000527889 FOXP3Q9BZS1 431 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 RETREG1Q9H6L5 497 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 NHEJ1Q9H9Q4 299 aaPredicted RBP4.42□□□□□ -1.7
CD44-226ENST00000527889 KIAA1586Q9HCI6 787 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 TMEM8AQ9HCN3 771 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 UBE2TQ9NPD8 197 aaPredicted RBP4.42□□□□□ -1.7
CD44-226ENST00000527889 LZTFL1Q9NQ48 299 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 PRMT7Q9NVM4 692 aaPredicted RBP4.42□□□□□ -1.7
CD44-226ENST00000527889 SAGE1Q9NXZ1 904 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 CLDND1Q9NY35 253 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 TRIM10Q9UDY6 481 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 GTF2IRD1Q9UHL9 959 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 ADGRE2Q9UHX3 823 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 DNAJC12Q9UKB3 198 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 PRDM4Q9UKN5 801 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 TCFL5Q9UL49 500 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 TFR2Q9UP52 801 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 PLAGL2Q9UPG8 496 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 TNFSF13BQ9Y275 285 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 ZNF281Q9Y2X9 895 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 REXO2Q9Y3B8 237 aaKnown RBP4.42□□□□□ -1.7
CD44-226ENST00000527889 EPN1Q9Y6I3 576 aaPredicted RBP4.42□□□□□ -1.7
CD44-226ENST00000527889 GRIN2DO15399 1336 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 UMODL1Q5DID0 1318 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 FLNBO75369 2602 aaKnown RBP4.42□□□□□ -1.7
CD44-226ENST00000527889 ATG2BQ96BY7 2078 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 WASH4PA8MWX3 477 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 LACTBL1A8MY62 500 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 F8VZ95 297 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 H7BY64 318 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 FOXN3O00409 490 aaPredicted RBP4.41□□□□□ -1.7
CD44-226ENST00000527889 MAN2B1O00754 1011 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 ZNF263O14978 683 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 KIAA0391O15091 583 aaKnown RBP4.41□□□□□ -1.7
CD44-226ENST00000527889 P4HA2O15460 535 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 ZSCAN12O43309 604 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 AKR1B10O60218 316 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 CALCAP01258 141 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 C4BPAP04003 597 aaKnown RBP4.41□□□□□ -1.7
CD44-226ENST00000527889 SERPING1P05155 500 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 CCDC175P0C221 793 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 STAG3L1P0CL83 205 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 GNAT1P11488 350 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 NEFHP12036 1026 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 TNNT1P13805 278 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 DARSP14868 501 aaKnown RBP4.41□□□□□ -1.7
CD44-226ENST00000527889 AGXTP21549 392 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 C5AR1P21730 350 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 PTX3P26022 381 aaPredicted RBP4.41□□□□□ -1.7
CD44-226ENST00000527889 CST5P28325 142 aaPredicted RBP4.41□□□□□ -1.7
CD44-226ENST00000527889 HOXA11P31270 313 aaPredicted RBP4.41□□□□□ -1.7
CD44-226ENST00000527889 HOXC8P31273 242 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 HNRNPH3P31942 346 aaKnown RBP4.41□□□□□ -1.7
CD44-226ENST00000527889 GTF2H1P32780 548 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 USP8P40818 1118 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 STAT1P42224 750 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 CASP2P42575 452 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 MTNR1BP49286 362 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 MRPS6P82932 125 aaKnown RBP4.41□□□□□ -1.7
CD44-226ENST00000527889 TFAMQ00059 246 aaKnown RBP4.41□□□□□ -1.7
CD44-226ENST00000527889 CDK17Q00537 523 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 KLHL30Q0D2K2 578 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 CETN1Q12798 172 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 ARHGEF6Q15052 776 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 PTPN14Q15678 1187 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 PTGISQ16647 500 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 IFI16Q16666 785 aaKnown RBP4.41□□□□□ -1.7
CD44-226ENST00000527889 ZACNQ401N2 412 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 SLC9C1Q4G0N8 1177 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 ATAT1Q5SQI0 421 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 JADE1Q6IE81 842 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 ESRP1Q6NXG1 681 aaKnown RBP4.41□□□□□ -1.7
CD44-226ENST00000527889 LILRA6Q6PI73 481 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 PAOXQ6QHF9 649 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 C15orf39Q6ZRI6 1047 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 BEND4Q6ZU67 534 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 FRMD7Q6ZUT3 714 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 ZNF571Q7Z3V5 609 aaPredicted RBP4.41□□□□□ -1.7
CD44-226ENST00000527889 IRF2BP2Q7Z5L9 587 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 USP37Q86T82 979 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 KIAA1328Q86T90 577 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 SERINC5Q86VE9 423 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 FAM228AQ86W67 206 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 DNAAF5Q86Y56 855 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 SHISA5Q8N114 240 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 Q8N1Y9 231 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 PCSK9Q8NBP7 692 aaKnown RBP4.41□□□□□ -1.7
CD44-226ENST00000527889 MYRIPQ8NFW9 859 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 MAFAQ8NHW3 353 aaPredicted RBP4.41□□□□□ -1.7
CD44-226ENST00000527889 SH3RF2Q8TEC5 729 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms