RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 P3H4Q92791 437 aa19.51■□□□□ 0.71
VPS28-207ENST00000526977 TLCD1Q96CP7 247 aa19.51■□□□□ 0.71
VPS28-207ENST00000526977 CDK5RAP1Q96SZ6 601 aaKnown RBP19.51■□□□□ 0.71
VPS28-207ENST00000526977 MAGEB5Q9BZ81 275 aa19.51■□□□□ 0.71
VPS28-207ENST00000526977 MTPAPQ9NVV4 582 aaKnown RBP eCLIP19.51■□□□□ 0.711e-6■■□□□ 14.1
VPS28-207ENST00000526977 COL4A4P53420 1690 aaPredicted RBP19.51■□□□□ 0.71
VPS28-207ENST00000526977 SYNJ2BP-COX16A0A087WUM0 186 aa19.51■□□□□ 0.71
VPS28-207ENST00000526977 ACSL3O95573 720 aa19.51■□□□□ 0.71
VPS28-207ENST00000526977 LRG1P02750 347 aa19.51■□□□□ 0.71
VPS28-207ENST00000526977 RPL22P35268 128 aaKnown RBP19.51■□□□□ 0.71
VPS28-207ENST00000526977 ACTN2P35609 894 aa19.51■□□□□ 0.71
VPS28-207ENST00000526977 CXCR3P49682 368 aa19.51■□□□□ 0.71
VPS28-207ENST00000526977 EIF4EBP2Q13542 120 aaPredicted RBP19.51■□□□□ 0.71
VPS28-207ENST00000526977 MORF4L2Q15014 288 aa19.51■□□□□ 0.71
VPS28-207ENST00000526977 ARL13BQ3SXY8 428 aa19.51■□□□□ 0.71
VPS28-207ENST00000526977 C6orf118Q5T5N4 469 aa19.51■□□□□ 0.71
VPS28-207ENST00000526977 MSANTD2Q6P1R3 559 aa19.51■□□□□ 0.71
VPS28-207ENST00000526977 C1orf228Q6PIY5 440 aa19.51■□□□□ 0.71
VPS28-207ENST00000526977 TADA2BQ86TJ2 420 aa19.51■□□□□ 0.71
VPS28-207ENST00000526977 TAC4Q86UU9 113 aa19.51■□□□□ 0.71
VPS28-207ENST00000526977 ADAM32Q8TC27 787 aa19.51■□□□□ 0.71
VPS28-207ENST00000526977 TRAF3IP1Q8TDR0 691 aaPredicted RBP19.51■□□□□ 0.71
VPS28-207ENST00000526977 PGM2Q96G03 612 aa19.51■□□□□ 0.71
VPS28-207ENST00000526977 ZNF512Q96ME7 567 aaPredicted RBP19.51■□□□□ 0.71
VPS28-207ENST00000526977 WDCPQ9H6R7 721 aa19.51■□□□□ 0.71
VPS28-207ENST00000526977 WDR6Q9NNW5 1121 aaKnown RBP19.51■□□□□ 0.71
VPS28-207ENST00000526977 NINJ2Q9NZG7 142 aa19.51■□□□□ 0.71
VPS28-207ENST00000526977 COX16Q9P0S2 106 aa19.51■□□□□ 0.71
VPS28-207ENST00000526977 PRDM4Q9UKN5 801 aa19.51■□□□□ 0.71
VPS28-207ENST00000526977 GBF1Q92538 1859 aa19.5■□□□□ 0.71
VPS28-207ENST00000526977 MCF2LO15068 1137 aa19.5■□□□□ 0.71
VPS28-207ENST00000526977 CSPG5O95196 566 aa19.5■□□□□ 0.71
VPS28-207ENST00000526977 C8AP07357 584 aa19.5■□□□□ 0.71
VPS28-207ENST00000526977 HPDP32754 393 aaPredicted RBP19.5■□□□□ 0.71
VPS28-207ENST00000526977 RGS19P49795 217 aa19.5■□□□□ 0.71
VPS28-207ENST00000526977 MAGOHP61326 146 aaKnown RBP19.5■□□□□ 0.71
VPS28-207ENST00000526977 DPYSL2Q16555 572 aa19.5■□□□□ 0.71
VPS28-207ENST00000526977 SLC9A4Q6AI14 798 aa19.5■□□□□ 0.71
VPS28-207ENST00000526977 TTC19Q6DKK2 380 aaPredicted RBP19.5■□□□□ 0.71
VPS28-207ENST00000526977 FAM71DQ8N9W8 422 aa19.5■□□□□ 0.71
VPS28-207ENST00000526977 NTAN1Q96AB6 310 aa19.5■□□□□ 0.71
VPS28-207ENST00000526977 FAF2Q96CS3 445 aa19.5■□□□□ 0.71
VPS28-207ENST00000526977 SERPINB11Q96P15 392 aa19.5■□□□□ 0.71
VPS28-207ENST00000526977 RBM15Q96T37 977 aaKnown RBP eCLIP19.5■□□□□ 0.71
VPS28-207ENST00000526977 MTMR10Q9NXD2 777 aa19.5■□□□□ 0.71
VPS28-207ENST00000526977 TRPM5Q9NZQ8 1165 aa19.5■□□□□ 0.71
VPS28-207ENST00000526977 DPP7Q9UHL4 492 aa19.5■□□□□ 0.71
VPS28-207ENST00000526977 PLXNA3P51805 1871 aa19.5■□□□□ 0.71
VPS28-207ENST00000526977 ZNF487B1APH4 448 aa19.49■□□□□ 0.71
VPS28-207ENST00000526977 PPP6R3Q5H9R7 873 aaPredicted RBP19.49■□□□□ 0.71
VPS28-207ENST00000526977 B4GALNT4Q76KP1 1039 aa19.49■□□□□ 0.71
VPS28-207ENST00000526977 CROCCP2Q86T23 111 aa19.49■□□□□ 0.71
VPS28-207ENST00000526977 ZC3H18Q86VM9 953 aaKnown RBP19.49■□□□□ 0.71
VPS28-207ENST00000526977 ELMOD1Q8N336 334 aa19.49■□□□□ 0.71
VPS28-207ENST00000526977 CCDC185Q8N715 623 aa19.49■□□□□ 0.71
VPS28-207ENST00000526977 ARNTL2Q8WYA1 636 aa19.49■□□□□ 0.71
VPS28-207ENST00000526977 ZNF670Q9BS34 389 aa19.49■□□□□ 0.71
VPS28-207ENST00000526977 ROPN1BQ9BZX4 212 aaPredicted RBP19.49■□□□□ 0.71
VPS28-207ENST00000526977 DHX35Q9H5Z1 703 aaKnown RBP19.49■□□□□ 0.71
VPS28-207ENST00000526977 CERS4Q9HA82 394 aa19.49■□□□□ 0.71
VPS28-207ENST00000526977 ROPN1Q9HAT0 212 aaPredicted RBP19.49■□□□□ 0.71
VPS28-207ENST00000526977 FZD10Q9ULW2 581 aa19.49■□□□□ 0.71
VPS28-207ENST00000526977 GREB1Q4ZG55 1949 aa19.49■□□□□ 0.71
VPS28-207ENST00000526977 RANBP2P49792 3224 aaKnown RBP19.49■□□□□ 0.71
VPS28-207ENST00000526977 ZNF840PA6NDX5 716 aa19.49■□□□□ 0.71
VPS28-207ENST00000526977 APOL1O14791 398 aa19.49■□□□□ 0.71
VPS28-207ENST00000526977 IRAK2O43187 625 aa19.49■□□□□ 0.71
VPS28-207ENST00000526977 STIP1P31948 543 aaKnown RBP19.49■□□□□ 0.71
VPS28-207ENST00000526977 ADRA1BP35368 520 aa19.49■□□□□ 0.71
VPS28-207ENST00000526977 MAGEA4P43358 317 aa19.49■□□□□ 0.71
VPS28-207ENST00000526977 GNGT1P63211 74 aa19.49■□□□□ 0.71
VPS28-207ENST00000526977 PABPC1LQ4VXU2 614 aaKnown RBP19.49■□□□□ 0.71
VPS28-207ENST00000526977 DARS2Q6PI48 645 aaKnown RBP19.49■□□□□ 0.71
VPS28-207ENST00000526977 LRRC31Q6UY01 552 aa19.49■□□□□ 0.71
VPS28-207ENST00000526977 EPS8L3Q8TE67 593 aaKnown RBP19.49■□□□□ 0.71
VPS28-207ENST00000526977 CASP10Q92851 521 aa19.49■□□□□ 0.71
VPS28-207ENST00000526977 SFMBT1Q9UHJ3 866 aa19.49■□□□□ 0.71
VPS28-207ENST00000526977 AP4E1Q9UPM8 1137 aa19.49■□□□□ 0.71
VPS28-207ENST00000526977 FARP1Q9Y4F1 1045 aaPredicted RBP19.49■□□□□ 0.71
VPS28-207ENST00000526977 SMIM23A6NLE4 172 aa19.48■□□□□ 0.71
VPS28-207ENST00000526977 A6NNZ2 444 aa19.48■□□□□ 0.71
VPS28-207ENST00000526977 RASGRF2O14827 1237 aa19.48■□□□□ 0.71
VPS28-207ENST00000526977 CLASP2O75122 1294 aaKnown RBP19.48■□□□□ 0.71
VPS28-207ENST00000526977 TGM2P21980 687 aa19.48■□□□□ 0.71
VPS28-207ENST00000526977 SCAPQ12770 1279 aa19.48■□□□□ 0.71
VPS28-207ENST00000526977 TUBB8Q3ZCM7 444 aa19.48■□□□□ 0.71
VPS28-207ENST00000526977 BRMS1LQ5PSV4 323 aa19.48■□□□□ 0.71
VPS28-207ENST00000526977 CEP128Q6ZU80 1094 aa19.48■□□□□ 0.71
VPS28-207ENST00000526977 PCGF5Q86SE9 256 aa19.48■□□□□ 0.71
VPS28-207ENST00000526977 ARFGAP2Q8N6H7 521 aa19.48■□□□□ 0.71
VPS28-207ENST00000526977 RNF34Q969K3 372 aa19.48■□□□□ 0.71
VPS28-207ENST00000526977 NDC80O14777 642 aa19.47■□□□□ 0.71
VPS28-207ENST00000526977 TLR5O60602 858 aa19.47■□□□□ 0.71
VPS28-207ENST00000526977 CCR1P32246 355 aa19.47■□□□□ 0.71
VPS28-207ENST00000526977 TUBP50607 506 aa19.47■□□□□ 0.71
VPS28-207ENST00000526977 SMAD3P84022 425 aaKnown RBP19.47■□□□□ 0.71
VPS28-207ENST00000526977 EFHC2Q5JST6 749 aa19.47■□□□□ 0.71
VPS28-207ENST00000526977 PPM1LQ5SGD2 360 aa19.47■□□□□ 0.71
VPS28-207ENST00000526977 C10orf120Q5SQS8 335 aa19.47■□□□□ 0.71
VPS28-207ENST00000526977 CPT1BQ92523 772 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms