RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 SLC5A9Q2M3M2 681 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 FAM209BQ5JX69 171 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 RUSC1-AS1Q66K80 236 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 DHRS13Q6UX07 377 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 PCGF5Q86SE9 256 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 RPAINQ86UA6 219 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 RHPN2Q8IUC4 686 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 GLIS1Q8NBF1 620 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 KAT2BQ92831 832 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 SLC25A28Q96A46 364 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 ZNF845Q96IR2 970 aaPredicted RBP2.7□□□□□ -1.98
CD44-216ENST00000525293 GDF15Q99988 308 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 ARPC5LQ9BPX5 153 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 TUBB6Q9BUF5 446 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 ELOVL1Q9BW60 279 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 COLEC11Q9BWP8 271 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 SEZ6LQ9BYH1 1024 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 TRIM2Q9C040 744 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 RSPH9Q9H1X1 276 aaPredicted RBP2.7□□□□□ -1.98
CD44-216ENST00000525293 CDCP1Q9H5V8 836 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 SEMA4BQ9NPR2 832 aaPredicted RBP2.7□□□□□ -1.98
CD44-216ENST00000525293 STARD7Q9NQZ5 370 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 ZBTB40Q9NUA8 1239 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 RGL1Q9NZL6 768 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 MSRB1Q9NZV6 116 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 IPO11Q9UI26 975 aaKnown RBP2.7□□□□□ -1.98
CD44-216ENST00000525293 ISY1Q9ULR0 285 aaKnown RBP2.7□□□□□ -1.98
CD44-216ENST00000525293 SMC3Q9UQE7 1217 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 B3GNT3Q9Y2A9 372 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 SLC45A1Q9Y2W3 748 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 SPATA31A5Q5VU36 1347 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 SPATA31A7Q8IWB4 1347 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 IGKV2D-30A0A075B6S6 120 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 TRBV5-3A0A0A0MS03 114 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 TMEM272A0A1B0GTI8 110 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 DYTNA2CJ06 578 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 PRSS47A8MTI9 375 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 J3KTA2 159 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 TIMM44O43615 452 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 PRC1O43663 620 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 FGF18O76093 207 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 SYF2O95926 243 aaKnown RBP2.69□□□□□ -1.98
CD44-216ENST00000525293 TOMM40O96008 361 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 LDHAP00338 332 aaKnown RBP2.69□□□□□ -1.98
CD44-216ENST00000525293 FGF2P09038 288 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 VDRP11473 427 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 TRIM27P14373 513 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 TNFSF4P23510 183 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 SLC8A1P32418 973 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 NSUN2Q08J23 767 aaKnown RBP eCLIP2.69□□□□□ -1.98
CD44-216ENST00000525293 DMWDQ09019 674 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 ZKSCAN8Q15776 578 aaPredicted RBP2.69□□□□□ -1.98
CD44-216ENST00000525293 MAPKAPK3Q16644 382 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 PRTGQ2VWP7 1150 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 ANXA2RQ3ZCQ2 193 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 MIDNQ504T8 468 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 GLE1Q53GS7 698 aaKnown RBP2.69□□□□□ -1.98
CD44-216ENST00000525293 DAB2IPQ5VWQ8 1189 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 LIPMQ5VYY2 423 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 ZNF549Q6P9A3 640 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 FBXO38Q6PIJ6 1188 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 C16orf89Q6UX73 402 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 C9orf47Q6ZRZ4 202 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 KRT27Q7Z3Y8 459 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 RASGRP3Q8IV61 690 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 LAS2Q8IYD9 372 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 ARL14EPQ8N8R7 260 aaPredicted RBP2.69□□□□□ -1.98
CD44-216ENST00000525293 SLC44A5Q8NCS7 719 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 ADAMTS15Q8TE58 950 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 GLMPQ8WWB7 406 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 ASB12Q8WXK4 309 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 ZNF566Q969W8 418 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 C8orf48Q96LL4 319 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 NLRP4Q96MN2 994 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 CAMK1GQ96NX5 476 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 GPR78Q96P69 363 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 NUDT22Q9BRQ3 303 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 EIF2AQ9BY44 585 aaKnown RBP2.69□□□□□ -1.98
CD44-216ENST00000525293 KRTAP1-5Q9BYS1 174 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 CXorf56Q9H5V9 222 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 MLXIPQ9HAP2 919 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 PAPOLBQ9NRJ5 636 aaKnown RBP2.69□□□□□ -1.98
CD44-216ENST00000525293 DECR2Q9NUI1 292 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 RAI14Q9P0K7 980 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 ZNF580Q9UK33 172 aa2.69□□□□□ -1.98
CD44-216ENST00000525293 EMSYQ7Z589 1322 aa2.68□□□□□ -1.98
CD44-216ENST00000525293 CENPJQ9HC77 1338 aaPredicted RBP2.68□□□□□ -1.98
CD44-216ENST00000525293 PNMA6EA0A0J9YXQ4 647 aa2.68□□□□□ -1.98
CD44-216ENST00000525293 PODXLO00592 558 aa2.68□□□□□ -1.98
CD44-216ENST00000525293 KIF3BO15066 747 aa2.68□□□□□ -1.98
CD44-216ENST00000525293 NPC1O15118 1278 aa2.68□□□□□ -1.98
CD44-216ENST00000525293 PRPF4O43172 522 aaKnown RBP eCLIP2.68□□□□□ -1.98
CD44-216ENST00000525293 DHHO43323 396 aa2.68□□□□□ -1.98
CD44-216ENST00000525293 TLX3O43711 291 aaPredicted RBP2.68□□□□□ -1.98
CD44-216ENST00000525293 ZC3H11AO75152 810 aaKnown RBP eCLIP2.68□□□□□ -1.98
CD44-216ENST00000525293 TAF5LO75529 589 aa2.68□□□□□ -1.98
CD44-216ENST00000525293 EPN2O95208 641 aa2.68□□□□□ -1.98
CD44-216ENST00000525293 RFPL3SP0C7P2 107 aa2.68□□□□□ -1.98
CD44-216ENST00000525293 CCKBRP32239 447 aa2.68□□□□□ -1.98
CD44-216ENST00000525293 SSR1P43307 286 aaKnown RBP2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms