RNA–Protein interactions for RNA: ENST00000524006.5

SPIDR-222, Transcript of scaffold protein involved in DNA repair, human

TSL 5

Gene SPIDR, Length 970 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-222	ENST00000524006	FYB2	Q5VWT5	728 aa		11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	SYPL2	Q5VXT5	272 aa		11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	BSPRY	Q5W0U4	402 aa		11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	NUGGC	Q68CJ6	796 aa		11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	ZNF280D	Q6N043	979 aa		11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	VSTM1	Q6UX27	236 aa		11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	HFE2	Q6ZVN8	426 aa		11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	GPRIN1	Q7Z2K8	1008 aa		11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	LRRC34	Q8IZ02	419 aa		11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	C4orf33	Q8N1A6	199 aa		11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	SCML4	Q8N228	414 aa		11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	CCDC33	Q8N5R6	958 aa		11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	PPM1N	Q8N819	430 aa		11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	COLGALT1	Q8NBJ5	622 aa		11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	GSDMB	Q8TAX9	411 aa		11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	CKAP2	Q8WWK9	683 aa		11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	SEPT8	Q92599	483 aa		11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	APBB2	Q92870	758 aa		11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	GRAMD1A	Q96CP6	724 aa		11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	STAMBPL1	Q96FJ0	436 aa		11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	OLFM3	Q96PB7	478 aa		11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	KCNK16	Q96T55	309 aa		11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	PAAF1	Q9BRP4	392 aa		11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	RHOBTB2	Q9BYZ6	727 aa		11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	UBE2O	Q9C0C9	1292 aa	Known RBP	11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	TRPV6	Q9H1D0	765 aa		11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	SSU72	Q9NP77	194 aa	Known RBP	11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	ABCC13	Q9NSE7	274 aa		11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	TXNDC16	Q9P2K2	825 aa		11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	FBXW11	Q9UKB1	542 aa		11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	PRG3	Q9Y2Y8	225 aa	Predicted RBP	11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	PCDHB7	Q9Y5E2	793 aa		11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	MYLK	Q15746	1914 aa		11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	MUC3A	Q02505	3323 aa		11.09	□□□□□ -0.63
SPIDR-222	ENST00000524006	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	TRDMT1	O14717	391 aa	Known RBP	11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	INPPL1	O15357	1258 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	FGF10	O15520	208 aa	Predicted RBP	11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	DGKI	O75912	1065 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	KRT38	O76015	456 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	EPHB2	P29323	1055 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	HTR7	P34969	479 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	HCAR3	P49019	387 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	GLUD2	P49448	558 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	SERPINB9	P50453	376 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	AFF1	P51825	1210 aa	Known RBP	11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	GPX6	P59796	221 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	DPYS	Q14117	519 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	PRKD1	Q15139	912 aa	Predicted RBP	11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	MSS51	Q4VC12	460 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	BRMS1L	Q5PSV4	323 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	TTC39B	Q5VTQ0	682 aa	Predicted RBP	11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	OTUD1	Q5VV17	481 aa	Predicted RBP	11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	RWDD4	Q6NW29	188 aa	Known RBP	11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	FAM171B	Q6P995	826 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	FAM43B	Q6ZT52	329 aa	Predicted RBP	11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	CCDC91	Q7Z6B0	441 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	YTHDF3	Q7Z739	585 aa	Known RBP	11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	TAC4	Q86UU9	113 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	CCNJL	Q8IV13	435 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	C10orf67	Q8IYJ2	551 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	CYP4X1	Q8N118	509 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	NT5C3B	Q969T7	300 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	PGAP3	Q96FM1	320 aa	Predicted RBP	11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	PPP1R2P1	Q96PQ5	205 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	ELAC2	Q9BQ52	826 aa	Known RBP	11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	NAT9	Q9BTE0	207 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	COLEC11	Q9BWP8	271 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	MRPL9	Q9BYD2	267 aa	Known RBP	11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	TKTL2	Q9H0I9	626 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	RASSF4	Q9H2L5	321 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	FBXO44	Q9H4M3	255 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	CATSPERB	Q9H7T0	1116 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	CSNK1G1	Q9HCP0	422 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	TMEM161A	Q9NX61	479 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	MTMR10	Q9NXD2	777 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	PCDHB5	Q9Y5E4	795 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	USP3	Q9Y6I4	520 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	TEX264	Q9Y6I9	313 aa		11.08	□□□□□ -0.64
SPIDR-222	ENST00000524006	TCRBV9S1A1T	A0A576	114 aa		11.07	□□□□□ -0.64
SPIDR-222	ENST00000524006		F5H423	210 aa	Predicted RBP	11.07	□□□□□ -0.64
SPIDR-222	ENST00000524006	TMEM189-UBE2V1	I3L0A0	370 aa		11.07	□□□□□ -0.64
SPIDR-222	ENST00000524006	ARVCF	O00192	962 aa		11.07	□□□□□ -0.64
SPIDR-222	ENST00000524006	AP3B1	O00203	1094 aa		11.07	□□□□□ -0.64
SPIDR-222	ENST00000524006	SYN3	O14994	580 aa		11.07	□□□□□ -0.64
SPIDR-222	ENST00000524006	TM9SF1	O15321	606 aa		11.07	□□□□□ -0.64
SPIDR-222	ENST00000524006	PSMD3	O43242	534 aa		11.07	□□□□□ -0.64
SPIDR-222	ENST00000524006	LPXN	O60711	386 aa		11.07	□□□□□ -0.64
SPIDR-222	ENST00000524006	APOE	P02649	317 aa		11.07	□□□□□ -0.64
SPIDR-222	ENST00000524006	SLC2A3	P11169	496 aa		11.07	□□□□□ -0.64
SPIDR-222	ENST00000524006	MLN	P12872	115 aa		11.07	□□□□□ -0.64
SPIDR-222	ENST00000524006	ALAD	P13716	330 aa		11.07	□□□□□ -0.64
SPIDR-222	ENST00000524006	CPB1	P15086	417 aa		11.07	□□□□□ -0.64
SPIDR-222	ENST00000524006	VAV1	P15498	845 aa		11.07	□□□□□ -0.64
SPIDR-222	ENST00000524006	ERCC2	P18074	760 aa		11.07	□□□□□ -0.64
SPIDR-222	ENST00000524006	KRT4	P19013	534 aa		11.07	□□□□□ -0.64
SPIDR-222	ENST00000524006	GARS	P41250	739 aa	Known RBP	11.07	□□□□□ -0.64
SPIDR-222	ENST00000524006	CXCR3	P49682	368 aa		11.07	□□□□□ -0.64
SPIDR-222	ENST00000524006	RABGGTB	P53611	331 aa		11.07	□□□□□ -0.64
SPIDR-222	ENST00000524006	SLC5A3	P53794	718 aa		11.07	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms