RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 PAMP19021 973 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 SERPINB3P29508 390 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 PMLP29590 882 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 PTPN7P35236 360 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 GABRB2P47870 512 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 PRAMEP78395 509 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 CTXN3Q4LDR2 81 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 N4BP2L1Q5TBK1 243 aaPredicted RBP10.43□□□□□ -0.74
MCF2-209ENST00000520602 IFNLR1Q8IU57 520 aaPredicted RBP10.43□□□□□ -0.74
MCF2-209ENST00000520602 IGDCC3Q8IVU1 814 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 BBS5Q8N3I7 341 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 FITM2Q8N6M3 262 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 PQLC3Q8N755 202 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 DTX3LQ8TDB6 740 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 NAT9Q9BTE0 207 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 RBM22Q9NW64 420 aaKnown RBP eCLIP10.43□□□□□ -0.74
MCF2-209ENST00000520602 SLC45A1Q9Y2W3 748 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 HACD1B0YJ81 288 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 TRDMT1O14717 391 aaKnown RBP10.43□□□□□ -0.74
MCF2-209ENST00000520602 UGT1A9O60656 530 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 GPC4O75487 556 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 DAB1O75553 588 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 TKTP29401 623 aaKnown RBP10.43□□□□□ -0.74
MCF2-209ENST00000520602 TUBP50607 506 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 KCNA10Q16322 511 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 PARP6Q2NL67 630 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 ADGRD1Q6QNK2 874 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 PIGWQ7Z7B1 504 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.43□□□□□ -0.74
MCF2-209ENST00000520602 GPR152Q8TDT2 470 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 SLC44A1Q8WWI5 657 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 LRRC39Q96DD0 335 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 MTBPQ96DY7 904 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 IFT43Q96FT9 208 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 UGT1A7Q9HAW7 530 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 UGT1A10Q9HAW8 530 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 UGT1A8Q9HAW9 530 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 L3MBTL1Q9Y468 752 aa10.43□□□□□ -0.74
MCF2-209ENST00000520602 TRPA1O75762 1119 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 CCR1P32246 355 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 PGM1P36871 562 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 INHBEP58166 350 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 TAF11Q15544 211 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 MAP7D1Q3KQU3 841 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 EMC10Q5UCC4 262 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 EMID1Q96A84 441 aaPredicted RBP10.42□□□□□ -0.74
MCF2-209ENST00000520602 CCDC124Q96CT7 223 aaKnown RBP10.42□□□□□ -0.74
MCF2-209ENST00000520602 VPS39Q96JC1 886 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 ZNF512Q96ME7 567 aaPredicted RBP10.42□□□□□ -0.74
MCF2-209ENST00000520602 CNGB3Q9NQW8 809 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 FAM237BA0A1B0GVD1 139 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 MSI1O43347 362 aaKnown RBP10.42□□□□□ -0.74
MCF2-209ENST00000520602 BNIP3LO60238 219 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 CCDC22O60826 627 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 EDF1O60869 148 aaKnown RBP10.42□□□□□ -0.74
MCF2-209ENST00000520602 TCEA3O75764 348 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 NFKB1P19838 968 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 TIGD5Q53EQ6 642 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 FAM171A1Q5VUB5 890 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 GDF6Q6KF10 455 aaPredicted RBP10.42□□□□□ -0.74
MCF2-209ENST00000520602 CLEC20AQ6ZU45 233 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 CHSY1Q86X52 802 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 ECHDC2Q86YB7 292 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 AGGF1Q8N302 714 aaeCLIP10.42□□□□□ -0.74
MCF2-209ENST00000520602 MPP5Q8N3R9 675 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 PPHLN1Q8NEY8 458 aaKnown RBP10.42□□□□□ -0.74
MCF2-209ENST00000520602 NSL1Q96IY1 281 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 SERAC1Q96JX3 654 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 RPRD1AQ96P16 312 aaPredicted RBP10.42□□□□□ -0.74
MCF2-209ENST00000520602 COLEC11Q9BWP8 271 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 GTSE1Q9NYZ3 720 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 FLRT1Q9NZU1 646 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 DSEQ9UL01 958 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 STARD13Q9Y3M8 1113 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 C5orf60A6NFR6 353 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 BEST1O76090 585 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 ASMTLO95671 621 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 PURAQ00577 322 aaKnown RBP10.42□□□□□ -0.74
MCF2-209ENST00000520602 MPP3Q13368 585 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 CCNJLQ8IV13 435 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 UNC5BQ8IZJ1 945 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 CNPY4Q8N129 248 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 AFAP1L2Q8N4X5 818 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 STKLD1Q8NE28 680 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 FBXO32Q969P5 355 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 FICDQ9BVA6 458 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 STARD7Q9NQZ5 370 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 SYBUQ9NX95 663 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 DNAJC16Q9Y2G8 782 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 GIT1Q9Y2X7 761 aa10.42□□□□□ -0.74
MCF2-209ENST00000520602 C2orf71A6NGG8 1288 aa10.41□□□□□ -0.74
MCF2-209ENST00000520602 PIRO00625 290 aa10.41□□□□□ -0.74
MCF2-209ENST00000520602 NRP1O14786 923 aa10.41□□□□□ -0.74
MCF2-209ENST00000520602 GLRA3O75311 464 aa10.41□□□□□ -0.74
MCF2-209ENST00000520602 SKIP12755 728 aa10.41□□□□□ -0.74
MCF2-209ENST00000520602 PGAM1P18669 254 aa10.41□□□□□ -0.74
MCF2-209ENST00000520602 RAB27AP51159 221 aa10.41□□□□□ -0.74
MCF2-209ENST00000520602 ELF3P78545 371 aaPredicted RBP10.41□□□□□ -0.74
MCF2-209ENST00000520602 XRCC4Q13426 336 aa10.41□□□□□ -0.74
MCF2-209ENST00000520602 ZNF235Q14590 738 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms