RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 ABCA10Q8WWZ4 1543 aa8.14□□□□□ -1.11
LSM1-202ENST00000520286 PI4KAP2A4QPH2 592 aa8.14□□□□□ -1.11
LSM1-202ENST00000520286 C3orf70A6NLC5 250 aaPredicted RBP8.14□□□□□ -1.11
LSM1-202ENST00000520286 ZNF213O14771 459 aa8.14□□□□□ -1.11
LSM1-202ENST00000520286 PRAMEF2O60811 474 aa8.14□□□□□ -1.11
LSM1-202ENST00000520286 TULP3O75386 442 aa8.14□□□□□ -1.11
LSM1-202ENST00000520286 F9P00740 461 aa8.14□□□□□ -1.11
LSM1-202ENST00000520286 ALDOAP04075 364 aaKnown RBP8.14□□□□□ -1.11
LSM1-202ENST00000520286 CHMP24386 653 aa8.14□□□□□ -1.11
LSM1-202ENST00000520286 PRKCHP24723 683 aa8.14□□□□□ -1.11
LSM1-202ENST00000520286 FOLR3P41439 243 aa8.14□□□□□ -1.11
LSM1-202ENST00000520286 RAE1P78406 368 aaKnown RBP8.14□□□□□ -1.11
LSM1-202ENST00000520286 PSG6Q00889 435 aa8.14□□□□□ -1.11
LSM1-202ENST00000520286 TDGQ13569 410 aa8.14□□□□□ -1.11
LSM1-202ENST00000520286 CAMK1Q14012 370 aa8.14□□□□□ -1.11
LSM1-202ENST00000520286 ERV3-1Q14264 604 aa8.14□□□□□ -1.11
LSM1-202ENST00000520286 PLAC9Q5JTB6 97 aa8.14□□□□□ -1.11
LSM1-202ENST00000520286 C16orf54Q6UWD8 224 aa8.14□□□□□ -1.11
LSM1-202ENST00000520286 PALM2Q8IXS6 379 aa8.14□□□□□ -1.11
LSM1-202ENST00000520286 TFAP2BQ92481 460 aa8.14□□□□□ -1.11
LSM1-202ENST00000520286 NPAS1Q99742 590 aa8.14□□□□□ -1.11
LSM1-202ENST00000520286 PDCL3Q9H2J4 239 aa8.14□□□□□ -1.11
LSM1-202ENST00000520286 TLR8Q9NR97 1041 aaKnown RBP8.14□□□□□ -1.11
LSM1-202ENST00000520286 CLIC5Q9NZA1 410 aa8.14□□□□□ -1.11
LSM1-202ENST00000520286 TESMINQ9Y4I5 508 aa8.14□□□□□ -1.11
LSM1-202ENST00000520286 ENTPD2Q9Y5L3 495 aa8.14□□□□□ -1.11
LSM1-202ENST00000520286 KIF13AQ9H1H9 1805 aa8.13□□□□□ -1.11
LSM1-202ENST00000520286 CYP3A7-CYP3A51PA0A087WV96 503 aa8.13□□□□□ -1.11
LSM1-202ENST00000520286 SUV39H1O43463 412 aa8.13□□□□□ -1.11
LSM1-202ENST00000520286 TJP3O95049 919 aa8.13□□□□□ -1.11
LSM1-202ENST00000520286 ENGP17813 658 aa8.13□□□□□ -1.11
LSM1-202ENST00000520286 CYP3A7P24462 503 aa8.13□□□□□ -1.11
LSM1-202ENST00000520286 ITPKBP27987 946 aa8.13□□□□□ -1.11
LSM1-202ENST00000520286 PCSK6P29122 969 aa8.13□□□□□ -1.11
LSM1-202ENST00000520286 CYP2C18P33260 490 aa8.13□□□□□ -1.11
LSM1-202ENST00000520286 GALNSP34059 522 aa8.13□□□□□ -1.11
LSM1-202ENST00000520286 JAK3P52333 1124 aa8.13□□□□□ -1.11
LSM1-202ENST00000520286 GPC5P78333 572 aa8.13□□□□□ -1.11
LSM1-202ENST00000520286 CDK18Q07002 472 aa8.13□□□□□ -1.11
LSM1-202ENST00000520286 SEC23BQ15437 767 aa8.13□□□□□ -1.11
LSM1-202ENST00000520286 TBC1D25Q3MII6 688 aa8.13□□□□□ -1.11
LSM1-202ENST00000520286 RUNDC3AQ59EK9 446 aa8.13□□□□□ -1.11
LSM1-202ENST00000520286 XP32Q5T750 250 aa8.13□□□□□ -1.11
LSM1-202ENST00000520286 ABHD17BQ5VST6 288 aa8.13□□□□□ -1.11
LSM1-202ENST00000520286 KRBA2Q6ZNG9 492 aa8.13□□□□□ -1.11
LSM1-202ENST00000520286 TMTC3Q6ZXV5 915 aa8.13□□□□□ -1.11
LSM1-202ENST00000520286 USP51Q70EK9 711 aa8.13□□□□□ -1.11
LSM1-202ENST00000520286 B4GALNT4Q76KP1 1039 aa8.13□□□□□ -1.11
LSM1-202ENST00000520286 ZNF551Q7Z340 670 aaPredicted RBP8.13□□□□□ -1.11
LSM1-202ENST00000520286 TTC9BQ8N6N2 239 aa8.13□□□□□ -1.11
LSM1-202ENST00000520286 SDF4Q9BRK5 362 aa8.13□□□□□ -1.11
LSM1-202ENST00000520286 DUSP22Q9NRW4 184 aa8.13□□□□□ -1.11
LSM1-202ENST00000520286 CAMK2AQ9UQM7 478 aa8.13□□□□□ -1.11
LSM1-202ENST00000520286 NAALADL1Q9UQQ1 740 aa8.13□□□□□ -1.11
LSM1-202ENST00000520286 MAPKBP1O60336 1514 aa8.13□□□□□ -1.11
LSM1-202ENST00000520286 FHAD1B1AJZ9 1412 aa8.12□□□□□ -1.11
LSM1-202ENST00000520286 PIPSLA2A3N6 862 aa8.12□□□□□ -1.11
LSM1-202ENST00000520286 SH2D7A6NKC9 451 aaPredicted RBP8.12□□□□□ -1.11
LSM1-202ENST00000520286 TNPO2O14787 897 aaKnown RBP8.12□□□□□ -1.11
LSM1-202ENST00000520286 TSPAN4O14817 238 aa8.12□□□□□ -1.11
LSM1-202ENST00000520286 C1RP00736 705 aa8.12□□□□□ -1.11
LSM1-202ENST00000520286 MBPP02686 304 aaPredicted RBP8.12□□□□□ -1.11
LSM1-202ENST00000520286 DUSP1P28562 367 aa8.12□□□□□ -1.11
LSM1-202ENST00000520286 GOLGA8FQ08AF8 430 aa8.12□□□□□ -1.11
LSM1-202ENST00000520286 LMAN2Q12907 356 aa8.12□□□□□ -1.11
LSM1-202ENST00000520286 KIAA0895LQ68EN5 471 aa8.12□□□□□ -1.11
LSM1-202ENST00000520286 SLC22A25Q6T423 547 aa8.12□□□□□ -1.11
LSM1-202ENST00000520286 MTHFD1LQ6UB35 978 aa8.12□□□□□ -1.11
LSM1-202ENST00000520286 WDR53Q7Z5U6 358 aaPredicted RBP8.12□□□□□ -1.11
LSM1-202ENST00000520286 ZMIZ2Q8NF64 920 aa8.12□□□□□ -1.11
LSM1-202ENST00000520286 ABHD11Q8NFV4 315 aa8.12□□□□□ -1.11
LSM1-202ENST00000520286 TIGD1Q96MW7 591 aa8.12□□□□□ -1.11
LSM1-202ENST00000520286 LENG8Q96PV6 779 aaPredicted RBP8.12□□□□□ -1.11
LSM1-202ENST00000520286 INTS2Q9H0H0 1204 aaKnown RBP8.12□□□□□ -1.11
LSM1-202ENST00000520286 MROH8Q9H579 483 aa8.12□□□□□ -1.11
LSM1-202ENST00000520286 ABHD10Q9NUJ1 306 aa8.12□□□□□ -1.11
LSM1-202ENST00000520286 THAP1Q9NVV9 213 aa8.12□□□□□ -1.11
LSM1-202ENST00000520286 ALKBH4Q9NXW9 302 aa8.12□□□□□ -1.11
LSM1-202ENST00000520286 DLL3Q9NYJ7 618 aa8.12□□□□□ -1.11
LSM1-202ENST00000520286 POLG2Q9UHN1 485 aa8.12□□□□□ -1.11
LSM1-202ENST00000520286 CD207Q9UJ71 328 aa8.12□□□□□ -1.11
LSM1-202ENST00000520286 ADGRL1O94910 1474 aa8.12□□□□□ -1.11
LSM1-202ENST00000520286 H3BNC9 293 aa8.11□□□□□ -1.11
LSM1-202ENST00000520286 K7ESM1 405 aa8.11□□□□□ -1.11
LSM1-202ENST00000520286 MYCLP12524 364 aaPredicted RBP8.11□□□□□ -1.11
LSM1-202ENST00000520286 LYL1P12980 280 aa8.11□□□□□ -1.11
LSM1-202ENST00000520286 GPD2P43304 727 aa8.11□□□□□ -1.11
LSM1-202ENST00000520286 DRG2P55039 364 aaKnown RBP8.11□□□□□ -1.11
LSM1-202ENST00000520286 PRICKLE4Q2TBC4 344 aa8.11□□□□□ -1.11
LSM1-202ENST00000520286 KRTAP19-4Q3LI73 84 aa8.11□□□□□ -1.11
LSM1-202ENST00000520286 FAM205BPQ63HN1 556 aa8.11□□□□□ -1.11
LSM1-202ENST00000520286 KAZNQ674X7 775 aa8.11□□□□□ -1.11
LSM1-202ENST00000520286 KIRREL2Q6UWL6 708 aa8.11□□□□□ -1.11
LSM1-202ENST00000520286 BRINP3Q76B58 766 aa8.11□□□□□ -1.11
LSM1-202ENST00000520286 SFTPA1Q8IWL2 248 aa8.11□□□□□ -1.11
LSM1-202ENST00000520286 C12orf76Q8N812 135 aaPredicted RBP8.11□□□□□ -1.11
LSM1-202ENST00000520286 ZCCHC10Q8TBK6 192 aa8.11□□□□□ -1.11
LSM1-202ENST00000520286 SNRNP27Q8WVK2 155 aaKnown RBP8.11□□□□□ -1.11
LSM1-202ENST00000520286 KCNJ9Q92806 393 aa8.11□□□□□ -1.11
LSM1-202ENST00000520286 HAS1Q92839 578 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms