RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 SH3BP1Q9Y3L3 701 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 PDHXO00330 501 aa12.96□□□□□ -0.33
USP53-209ENST00000514665 ALOX15BO15296 676 aa12.96□□□□□ -0.33
USP53-209ENST00000514665 H2AFYO75367 372 aaKnown RBP12.96□□□□□ -0.33
USP53-209ENST00000514665 KRT36O76013 467 aa12.96□□□□□ -0.33
USP53-209ENST00000514665 TRUB2O95900 331 aaKnown RBP12.96□□□□□ -0.33
USP53-209ENST00000514665 LTFP02788 710 aa12.96□□□□□ -0.33
USP53-209ENST00000514665 CLK1P49759 484 aaKnown RBP12.96□□□□□ -0.33
USP53-209ENST00000514665 PTPN20Q4JDL3 420 aa12.96□□□□□ -0.33
USP53-209ENST00000514665 GRTP1Q5TC63 336 aa12.96□□□□□ -0.33
USP53-209ENST00000514665 OTOAQ7RTW8 1153 aa12.96□□□□□ -0.33
USP53-209ENST00000514665 HELQQ8TDG4 1101 aa12.96□□□□□ -0.33
USP53-209ENST00000514665 APBB2Q92870 758 aa12.96□□□□□ -0.33
USP53-209ENST00000514665 SEPHS2Q99611 448 aa12.96□□□□□ -0.33
USP53-209ENST00000514665 DYRK4Q9NR20 520 aa12.96□□□□□ -0.33
USP53-209ENST00000514665 MAN1C1Q9NR34 630 aa12.96□□□□□ -0.33
USP53-209ENST00000514665 SLC17A7Q9P2U7 560 aa12.96□□□□□ -0.33
USP53-209ENST00000514665 DLG5Q8TDM6 1919 aa12.96□□□□□ -0.33
USP53-209ENST00000514665 UMODL1Q5DID0 1318 aa12.96□□□□□ -0.33
USP53-209ENST00000514665 CASZ1Q86V15 1759 aa12.96□□□□□ -0.33
USP53-209ENST00000514665 TCRBV9S1A1TA0A576 114 aa12.96□□□□□ -0.33
USP53-209ENST00000514665 MAGEB16A2A368 324 aa12.96□□□□□ -0.33
USP53-209ENST00000514665 CFAP99D6REC4 459 aa12.96□□□□□ -0.33
USP53-209ENST00000514665 CXCL11O14625 94 aa12.96□□□□□ -0.33
USP53-209ENST00000514665 MRPS22P82650 360 aaKnown RBP12.96□□□□□ -0.33
USP53-209ENST00000514665 CHRNB3Q05901 458 aa12.96□□□□□ -0.33
USP53-209ENST00000514665 KRT72Q14CN4 511 aa12.96□□□□□ -0.33
USP53-209ENST00000514665 RIPOR1Q6ZS17 1223 aa12.96□□□□□ -0.33
USP53-209ENST00000514665 P3H2Q8IVL5 708 aa12.96□□□□□ -0.33
USP53-209ENST00000514665 RBBP8Q99708 897 aa12.96□□□□□ -0.33
USP53-209ENST00000514665 EIF2AQ9BY44 585 aaKnown RBP12.96□□□□□ -0.33
USP53-209ENST00000514665 ABHD16BQ9H3Z7 469 aa12.96□□□□□ -0.33
USP53-209ENST00000514665 NMRK2Q9NPI5 230 aa12.96□□□□□ -0.33
USP53-209ENST00000514665 XPNPEP3Q9NQH7 507 aa12.96□□□□□ -0.33
USP53-209ENST00000514665 RHBDL2Q9NX52 303 aa12.96□□□□□ -0.33
USP53-209ENST00000514665 TNFSF13BQ9Y275 285 aa12.96□□□□□ -0.33
USP53-209ENST00000514665 A0A0A0MRY4 1105 aa12.96□□□□□ -0.34
USP53-209ENST00000514665 BUD23O43709 281 aaKnown RBP12.96□□□□□ -0.34
USP53-209ENST00000514665 MAFO75444 373 aaPredicted RBP12.96□□□□□ -0.34
USP53-209ENST00000514665 ALDH1A1P00352 501 aa12.96□□□□□ -0.34
USP53-209ENST00000514665 CREB1P16220 341 aa12.96□□□□□ -0.34
USP53-209ENST00000514665 HLA-DPA1P20036 260 aa12.96□□□□□ -0.34
USP53-209ENST00000514665 PCYT1AP49585 367 aa12.96□□□□□ -0.34
USP53-209ENST00000514665 CCDC153Q494R4 210 aa12.96□□□□□ -0.34
USP53-209ENST00000514665 WSCD1Q658N2 575 aa12.96□□□□□ -0.34
USP53-209ENST00000514665 KYAT3Q6YP21 454 aaKnown RBP12.96□□□□□ -0.34
USP53-209ENST00000514665 CPNE8Q86YQ8 564 aa12.96□□□□□ -0.34
USP53-209ENST00000514665 PLD3Q8IV08 490 aa12.96□□□□□ -0.34
USP53-209ENST00000514665 SENP8Q96LD8 212 aa12.96□□□□□ -0.34
USP53-209ENST00000514665 SPATA13Q96N96 652 aa12.96□□□□□ -0.34
USP53-209ENST00000514665 KCNK4Q9NYG8 393 aa12.96□□□□□ -0.34
USP53-209ENST00000514665 SPASTQ9UBP0 616 aa12.96□□□□□ -0.34
USP53-209ENST00000514665 MAN1A2O60476 641 aa12.96□□□□□ -0.34
USP53-209ENST00000514665 PSMG1O95456 288 aa12.96□□□□□ -0.34
USP53-209ENST00000514665 ITGB6P18564 788 aa12.96□□□□□ -0.34
USP53-209ENST00000514665 EPHX2P34913 555 aa12.96□□□□□ -0.34
USP53-209ENST00000514665 HSPA13P48723 471 aa12.96□□□□□ -0.34
USP53-209ENST00000514665 OXCT1P55809 520 aa12.96□□□□□ -0.34
USP53-209ENST00000514665 NR6A1Q15406 480 aa12.96□□□□□ -0.34
USP53-209ENST00000514665 OTUD3Q5T2D3 398 aaPredicted RBP12.96□□□□□ -0.34
USP53-209ENST00000514665 C12orf56Q8IXR9 622 aa12.96□□□□□ -0.34
USP53-209ENST00000514665 PCDH20Q8N6Y1 951 aaKnown RBP12.96□□□□□ -0.34
USP53-209ENST00000514665 WNT8BQ93098 351 aa12.96□□□□□ -0.34
USP53-209ENST00000514665 FOPNLQ96NB1 174 aa12.96□□□□□ -0.34
USP53-209ENST00000514665 KCNH4Q9UQ05 1017 aa12.96□□□□□ -0.34
USP53-209ENST00000514665 CRYL1Q9Y2S2 319 aa12.96□□□□□ -0.34
USP53-209ENST00000514665 SIGLEC1Q9BZZ2 1709 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 SPDYE5A6NIY4 337 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 CHADO15335 359 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 USP1O94782 785 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 CKMP06732 381 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 ABHD2P08910 425 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 TPBGLP0DKB5 382 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 NCALDP61601 193 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 NFE2Q16621 373 aaPredicted RBP12.95□□□□□ -0.34
USP53-209ENST00000514665 HSDL1Q3SXM5 330 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 SPDYE7PQ495Y7 208 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 PREPLQ4J6C6 727 aaPredicted RBP12.95□□□□□ -0.34
USP53-209ENST00000514665 ATP6AP1LQ52LC2 224 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 ZC3H12BQ5HYM0 836 aaKnown RBP12.95□□□□□ -0.34
USP53-209ENST00000514665 RNF43Q68DV7 783 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 PPP2R3CQ969Q6 453 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 DDX28Q9NUL7 540 aaKnown RBP12.95□□□□□ -0.34
USP53-209ENST00000514665 VPS9D1Q9Y2B5 631 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 ANKRD26Q9UPS8 1709 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 IGLV3-22A0A075B6J6 115 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 SPATA31C2B4DYI2 1134 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 C5orf58C9J3I9 102 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 INPP4BO15327 924 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 PEX10O60683 326 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 MPOP05164 745 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 SERPINF2P08697 491 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 GOT1P17174 413 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 ME2P23368 584 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 RGS2P41220 211 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 TRPC1P48995 793 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 RENBPP51606 427 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 FASTKD3Q14CZ7 662 aaKnown RBP12.95□□□□□ -0.34
USP53-209ENST00000514665 SLC35G1Q2M3R5 365 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 TBCELQ5QJ74 424 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms