RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 DENND1BQ6P3S1 775 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 FBXO16Q8IX29 292 aaPredicted RBP11.51□□□□□ -0.57
TCOF1-211ENST00000513346 SSU72Q9NP77 194 aaKnown RBP11.51□□□□□ -0.57
TCOF1-211ENST00000513346 ITGA11Q9UKX5 1188 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 DOLKQ9UPQ8 538 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 RUVBL2Q9Y230 463 aaKnown RBP11.51□□□□□ -0.57
TCOF1-211ENST00000513346 STXBP5LQ9Y2K9 1186 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 ANKRD63C9JTQ0 380 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 FGFR3P22607 806 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 CLCN3P51790 818 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 DMC1Q14565 340 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 ANO4Q32M45 955 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 PERM1Q5SV97 790 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 GPR107Q5VW38 600 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 TDRPQ86YL5 185 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 FAM71AQ8IYT1 594 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 ZBTB8BQ8NAP8 495 aaPredicted RBP11.51□□□□□ -0.57
TCOF1-211ENST00000513346 LRRC39Q96DD0 335 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 OMA1Q96E52 524 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 SPATC1LQ9H0A9 340 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 NCKIPSDQ9NZQ3 722 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 GNEQ9Y223 722 aaKnown RBP11.51□□□□□ -0.57
TCOF1-211ENST00000513346 RGSL1A5PLK6 1076 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 A6NHS1 94 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 MAP3K6O95382 1288 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 RPLP2P05387 115 aaKnown RBP11.5□□□□□ -0.57
TCOF1-211ENST00000513346 CCNA2P20248 432 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 TPI1P60174 286 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 SEZ6Q53EL9 994 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 STRA8Q7Z7C7 330 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 C12orf50Q8NA57 414 aaPredicted RBP11.5□□□□□ -0.57
TCOF1-211ENST00000513346 TFB1MQ8WVM0 346 aaKnown RBP11.5□□□□□ -0.57
TCOF1-211ENST00000513346 PLEKHA5Q9HAU0 1116 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 TRNAU1APQ9NX07 287 aaKnown RBP11.5□□□□□ -0.57
TCOF1-211ENST00000513346 FAM198AQ9UFP1 575 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 TCEA3O75764 348 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 PIAS1O75925 651 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 PEX2P28328 305 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 GP5P40197 560 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 RAD51Q06609 339 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 CYP24A1Q07973 514 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 CCDC85BQ15834 202 aaPredicted RBP11.5□□□□□ -0.57
TCOF1-211ENST00000513346 IMPG1Q17R60 797 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 FAM83EQ2M2I3 478 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 SV2CQ496J9 727 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.5□□□□□ -0.57
TCOF1-211ENST00000513346 CCDC126Q96EE4 140 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 HPDLQ96IR7 371 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 LRRC40Q9H9A6 602 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 PXMP2Q9NR77 195 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 C17orf102A2RUQ5 167 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 OGTO15294 1046 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 MAPTP10636 758 aaKnown RBP11.5□□□□□ -0.57
TCOF1-211ENST00000513346 GARTP22102 1010 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 SULT1E1P49888 294 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 PRKAA2P54646 552 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 AQP4P55087 323 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 ACTR3P61158 418 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 TRIM25Q14258 630 aaKnown RBP11.5□□□□□ -0.57
TCOF1-211ENST00000513346 EGFLAMQ63HQ2 1017 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 OSCP1Q8WVF1 389 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 BDH2Q9BUT1 245 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 RAD21L1Q9H4I0 556 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 USP18Q9UMW8 372 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 ATRNO75882 1429 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 TRIM43BA6NCK2 446 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 C2orf71A6NGG8 1288 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 BANF1O75531 89 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 LDLRP01130 860 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 ITGAVP06756 1048 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 OR1G1P47890 313 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 NPTX2P47972 431 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 GLRBP48167 497 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 FMO1Q01740 532 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 PPP3CAQ08209 521 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 ZNF235Q14590 738 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 SNX17Q15036 470 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 ZNF484Q5JVG2 852 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 CYP4X1Q8N118 509 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 PCSK9Q8NBP7 692 aaKnown RBP11.5□□□□□ -0.57
TCOF1-211ENST00000513346 ASIC4Q96FT7 647 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 SLITRK1Q96PX8 696 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 BBS2Q9BXC9 721 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 CPA4Q9UI42 421 aa11.5□□□□□ -0.57
TCOF1-211ENST00000513346 FARP1Q9Y4F1 1045 aaPredicted RBP11.5□□□□□ -0.57
TCOF1-211ENST00000513346 MRASO14807 208 aa11.49□□□□□ -0.57
TCOF1-211ENST00000513346 ASLP04424 464 aa11.49□□□□□ -0.57
TCOF1-211ENST00000513346 MPOP05164 745 aa11.49□□□□□ -0.57
TCOF1-211ENST00000513346 ALOX5P09917 674 aa11.49□□□□□ -0.57
TCOF1-211ENST00000513346 ZNF12P17014 697 aa11.49□□□□□ -0.57
TCOF1-211ENST00000513346 DSG3P32926 999 aa11.49□□□□□ -0.57
TCOF1-211ENST00000513346 MMRN1Q13201 1228 aa11.49□□□□□ -0.57
TCOF1-211ENST00000513346 POLNQ7Z5Q5 900 aa11.49□□□□□ -0.57
TCOF1-211ENST00000513346 AMIGO2Q86SJ2 522 aa11.49□□□□□ -0.57
TCOF1-211ENST00000513346 HAS1Q92839 578 aa11.49□□□□□ -0.57
TCOF1-211ENST00000513346 FAM162AQ96A26 154 aa11.49□□□□□ -0.57
TCOF1-211ENST00000513346 CEP44Q9C0F1 390 aa11.49□□□□□ -0.57
TCOF1-211ENST00000513346 EXOSC4Q9NPD3 245 aaKnown RBP11.49□□□□□ -0.57
TCOF1-211ENST00000513346 ACP6Q9NPH0 428 aa11.49□□□□□ -0.57
TCOF1-211ENST00000513346 MOSPD1Q9UJG1 213 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms