RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 SLC35F5Q8WV83 523 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 TFB1MQ8WVM0 346 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 NR1H4Q96RI1 486 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 SORT1Q99523 831 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 VPS33BQ9H267 617 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 SMARCAD1Q9H4L7 1026 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 MDM4O15151 490 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 MCF2P10911 925 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 CCDC130P13994 396 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 SAT1P21673 171 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 PSMB4P28070 264 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 ATXN3P54252 364 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 AQP4P55087 323 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 PITX1P78337 314 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 INCA1Q0VD86 236 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 SEMA5AQ13591 1074 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 C11orf91Q3C1V1 193 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 DALRD3Q5D0E6 543 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 PLPPR4Q7Z2D5 763 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 TMEM110Q86TL2 294 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 MFN1Q8IWA4 741 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 GDPD5Q8WTR4 605 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 NLRP7Q8WX94 980 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 SLC4A5Q9BY07 1137 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 SYBUQ9NX95 663 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 POMPQ9Y244 141 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 FER1L6Q2WGJ9 1857 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 CREB3O43889 395 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 CPA3P15088 417 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 RAB27AP51159 221 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 TMEM62Q0P6H9 643 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 DLG1Q12959 904 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 MED21Q13503 144 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 NCBP2-AS2Q69YL0 99 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 TIFABQ6ZNK6 161 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 ARNTL2Q8WYA1 636 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 C1orf21Q9H246 121 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 CAB39LQ9H9S4 337 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 DDX43Q9NXZ2 648 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 RNF103O00237 685 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 NEMP1O14524 444 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 AIM2O14862 343 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 RPS12P25398 132 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 TNFAIP2Q03169 654 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 TBCCQ15814 346 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 Q3C1V9 767 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 PID1Q7Z2X4 250 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 APLFQ8IW19 511 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 RAB3IL1Q8TBN0 382 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 APBB2Q92870 758 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 P2RY11Q96G91 374 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 APOL2Q9BQE5 337 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 GPAMQ9HCL2 828 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 COPG2Q9UBF2 871 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 CDH22Q9UJ99 828 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 A0A0A0MRY4 1105 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 GOLGA8TH3BQL2 631 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 C22orf31O95567 290 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 PRKCGP05129 697 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 RAG1P15918 1043 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 ARL4AP40617 200 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 ABCE1P61221 599 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 VGLL4Q14135 290 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 DPYSL2Q16555 572 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 SESTD1Q86VW0 696 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 RNF148Q8N7C7 305 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 ZNF781Q8N8C0 355 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 C18orf25Q96B23 403 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 SPATA13Q96N96 652 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 TRAPPC9Q96Q05 1148 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 VRTNQ9H8Y1 702 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 DCDC2Q9UHG0 476 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 KIAA1257Q9ULG3 409 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 DPYSL4O14531 572 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 ZBTB14O43829 449 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 MFSD11O43934 449 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 HSPA4LO95757 839 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 TBL3Q12788 808 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 MMEL1Q495T6 779 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 MARK2Q7KZI7 788 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 DCLK2Q8N568 766 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 MAPK15Q8TD08 544 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 ZMAT2Q96NC0 199 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 QKIQ96PU8 341 aaKnown RBP eCLIP9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 GCNAQ96QF7 691 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 PRDM12Q9H4Q4 367 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 WDR55Q9H6Y2 383 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 EVPLQ92817 2033 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 DGKIO75912 1065 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 VCLP18206 1134 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 ITGAXP20702 1163 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 SERPINB5P36952 375 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 CNPY1Q3B7I2 92 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 LIN52Q52LA3 116 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 EXOC8Q8IYI6 725 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 OR52K1Q8NGK4 314 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 ADAM32Q8TC27 787 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 ZNF669Q96BR6 464 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 AGAP2Q99490 1192 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 GCOM2Q9BZD3 368 aaPredicted RBP9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms