RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 ARHGEF35A5YM69 484 aa12.35□□□□□ -0.43
LIMCH1-213ENST00000511496 ASNSP08243 561 aa12.35□□□□□ -0.43
LIMCH1-213ENST00000511496 SLC5A1P13866 664 aa12.35□□□□□ -0.43
LIMCH1-213ENST00000511496 SLC18A2Q05940 514 aa12.35□□□□□ -0.43
LIMCH1-213ENST00000511496 PPP1R3AQ16821 1122 aa12.35□□□□□ -0.43
LIMCH1-213ENST00000511496 ATP13A4Q4VNC1 1196 aa12.35□□□□□ -0.43
LIMCH1-213ENST00000511496 RNASEH2BQ5TBB1 312 aaKnown RBP12.35□□□□□ -0.43
LIMCH1-213ENST00000511496 TUBA3EQ6PEY2 450 aa12.35□□□□□ -0.43
LIMCH1-213ENST00000511496 CYP20A1Q6UW02 462 aa12.35□□□□□ -0.43
LIMCH1-213ENST00000511496 ZUFSPQ96AP4 578 aa12.35□□□□□ -0.43
LIMCH1-213ENST00000511496 FERD3LQ96RJ6 166 aa12.35□□□□□ -0.43
LIMCH1-213ENST00000511496 RMND5AQ9H871 391 aa12.35□□□□□ -0.43
LIMCH1-213ENST00000511496 ASTN1O14525 1302 aa12.35□□□□□ -0.43
LIMCH1-213ENST00000511496 USP17L3A6NCW0 530 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 USP17L4A6NCW7 530 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 B3GALNT1O75752 331 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 DLGAP3O95886 979 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 HOXA7P31268 230 aaPredicted RBP12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 IDH3AP50213 366 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 RPL10AP62906 217 aaKnown RBP12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 CEACAM7Q14002 265 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 NFE2Q16621 373 aaPredicted RBP12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 Q3C1V9 767 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 TEX44Q53QW1 395 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 PLEKHG7Q6ZR37 379 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 USP17L1Q7RTZ2 530 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 OFCC1Q8IZS5 231 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 LARGE2Q8N3Y3 721 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 CYGBQ8WWM9 190 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 ELMO3Q96BJ8 720 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 PGBD4Q96DM1 585 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 LINC00854A0A1B0GVQ3 168 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 FAM172BPA6NC97 362 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 SAC3D1A6NKF1 404 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 HAT1O14929 419 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 SCO2O43819 266 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 KCNA4P22459 653 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 TTKP33981 857 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 QARSP47897 775 aaKnown RBP12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 TRPC3Q13507 836 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 FAM214AQ32MH5 1076 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 CEP55Q53EZ4 464 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 SNX32Q86XE0 403 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 ZNF34Q8IZ26 560 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 DSELQ8IZU8 1212 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 BEND7Q8N7W2 519 aaPredicted RBP12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 TMA16Q96EY4 203 aaKnown RBP12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 ZNF778Q96MU6 729 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 REEP2Q9BRK0 252 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 EMILIN2Q9BXX0 1053 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 ZNF304Q9HCX3 659 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 KCNN3Q9UGI6 736 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 HMGXB4Q9UGU5 601 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 TMEM2Q9UHN6 1383 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 TSPAN1O60635 241 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 CCNKO75909 580 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 TMEM191BP0C7N4 346 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 S100A5P33763 92 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 PSMC6P62333 389 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 CDK18Q07002 472 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 BFSP1Q12934 665 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 KLF10Q13118 480 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 KLF1Q13351 362 aaPredicted RBP12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 PAGE2BQ5JRK9 111 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 GATAD2AQ86YP4 633 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 TMEM126BQ8IUX1 230 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 CCDC28AQ8IWP9 274 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 NDUFAF2Q8N183 169 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 CADM2Q8N3J6 435 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 NAT16Q8N8M0 369 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 APPL2Q8NEU8 664 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 GLT1D1Q96MS3 346 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 BEGAINQ9BUH8 593 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 GMIPQ9P107 970 aa12.34□□□□□ -0.43
LIMCH1-213ENST00000511496 ZBBXA8MT70 800 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 ITIH1P19827 911 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 MRPS5P82675 430 aaKnown RBP12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 NPTX1Q15818 432 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 KCTD1Q719H9 257 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 ADAM32Q8TC27 787 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 ZFP90Q8TF47 636 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 RAPGEF4Q8WZA2 1011 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 COA7Q96BR5 231 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 DEPDC7Q96QD5 511 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 DOK1Q99704 481 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 DHRS4Q9BTZ2 278 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 CHID1Q9BWS9 393 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 C20orf96Q9NUD7 363 aaPredicted RBP12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 NDFIP2Q9NV92 336 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 ADPRHL2Q9NX46 363 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 ADA2Q9NZK5 511 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 SIRPGQ9P1W8 387 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 CAB39Q9Y376 341 aaPredicted RBP12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 GOLGA8JA6NMD2 632 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 ZBTB14O43829 449 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 MTA2O94776 668 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 ME2P23368 584 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 ATP6V0D1P61421 351 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 RINT1Q6NUQ1 792 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 ZNF354CQ86Y25 554 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms