RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 IRAK1P51617 712 aa12.3□□□□□ -0.44
CUX1-210ENST00000497815 MLLT6P55198 1093 aaPredicted RBP12.3□□□□□ -0.44
CUX1-210ENST00000497815 RPS24P62847 133 aaKnown RBP12.3□□□□□ -0.44
CUX1-210ENST00000497815 PFKPQ01813 784 aa12.3□□□□□ -0.44
CUX1-210ENST00000497815 SLC25A11Q02978 314 aaKnown RBP12.3□□□□□ -0.44
CUX1-210ENST00000497815 GAD2Q05329 585 aa12.3□□□□□ -0.44
CUX1-210ENST00000497815 MTA1Q13330 715 aa12.3□□□□□ -0.44
CUX1-210ENST00000497815 CA9Q16790 459 aa12.3□□□□□ -0.44
CUX1-210ENST00000497815 MPPE1Q53F39 396 aa12.3□□□□□ -0.44
CUX1-210ENST00000497815 ZFYVE27Q5T4F4 411 aa12.3□□□□□ -0.44
CUX1-210ENST00000497815 ERMARDQ5T6L9 678 aa12.3□□□□□ -0.44
CUX1-210ENST00000497815 FAM72AQ5TYM5 149 aa12.3□□□□□ -0.44
CUX1-210ENST00000497815 FAM72DQ6L9T8 149 aa12.3□□□□□ -0.44
CUX1-210ENST00000497815 C11orf63Q6NUN7 778 aa12.3□□□□□ -0.44
CUX1-210ENST00000497815 FBXL22Q6P050 247 aa12.3□□□□□ -0.44
CUX1-210ENST00000497815 LRRC31Q6UY01 552 aa12.3□□□□□ -0.44
CUX1-210ENST00000497815 CYP4V2Q6ZWL3 525 aaPredicted RBP12.3□□□□□ -0.44
CUX1-210ENST00000497815 FAM72BQ86X60 149 aa12.3□□□□□ -0.44
CUX1-210ENST00000497815 DNASE1L2Q92874 299 aa12.3□□□□□ -0.44
CUX1-210ENST00000497815 IGSF8Q969P0 613 aa12.3□□□□□ -0.44
CUX1-210ENST00000497815 P2RY11Q96G91 374 aa12.3□□□□□ -0.44
CUX1-210ENST00000497815 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.3□□□□□ -0.443e-6■□□□□ 8.8
CUX1-210ENST00000497815 OR12D3Q9UGF7 316 aa12.3□□□□□ -0.44
CUX1-210ENST00000497815 ALG6Q9Y672 507 aa12.3□□□□□ -0.44
CUX1-210ENST00000497815 CAPN6Q9Y6Q1 641 aa12.3□□□□□ -0.44
CUX1-210ENST00000497815 PIAS3Q9Y6X2 628 aa12.3□□□□□ -0.44
CUX1-210ENST00000497815 TYW5A2RUC4 315 aaKnown RBP12.29□□□□□ -0.44
CUX1-210ENST00000497815 E9PAM4 449 aa12.29□□□□□ -0.44
CUX1-210ENST00000497815 RARAP10276 462 aa12.29□□□□□ -0.44
CUX1-210ENST00000497815 TYRP14679 529 aa12.29□□□□□ -0.44
CUX1-210ENST00000497815 GJA4P35212 333 aa12.29□□□□□ -0.44
CUX1-210ENST00000497815 SLC1A1P43005 524 aa12.29□□□□□ -0.44
CUX1-210ENST00000497815 AIF1P55008 147 aa12.29□□□□□ -0.44
CUX1-210ENST00000497815 SCAPQ12770 1279 aa12.29□□□□□ -0.44
CUX1-210ENST00000497815 ATP13A4Q4VNC1 1196 aa12.29□□□□□ -0.44
CUX1-210ENST00000497815 SLC44A4Q53GD3 710 aa12.29□□□□□ -0.44
CUX1-210ENST00000497815 PPP6R3Q5H9R7 873 aaPredicted RBP12.29□□□□□ -0.44
CUX1-210ENST00000497815 RABGAP1LQ5R372 815 aa12.29□□□□□ -0.44
CUX1-210ENST00000497815 FYB2Q5VWT5 728 aa12.29□□□□□ -0.44
CUX1-210ENST00000497815 NAIF1Q69YI7 327 aaPredicted RBP12.29□□□□□ -0.44
CUX1-210ENST00000497815 RWDD4Q6NW29 188 aaKnown RBP12.29□□□□□ -0.44
CUX1-210ENST00000497815 UBALD2Q8IYN6 164 aa12.29□□□□□ -0.44
CUX1-210ENST00000497815 HJURPQ8NCD3 748 aaPredicted RBP12.29□□□□□ -0.44
CUX1-210ENST00000497815 KIAA1524Q8TCG1 905 aa12.29□□□□□ -0.44
CUX1-210ENST00000497815 C1orf74Q96LT6 269 aa12.29□□□□□ -0.44
CUX1-210ENST00000497815 KCTD15Q96SI1 283 aaPredicted RBP12.29□□□□□ -0.44
CUX1-210ENST00000497815 OSBPL2Q9H1P3 480 aa12.29□□□□□ -0.44
CUX1-210ENST00000497815 TRPV5Q9NQA5 729 aa12.29□□□□□ -0.44
CUX1-210ENST00000497815 KIF26AQ9ULI4 1882 aaPredicted RBP12.29□□□□□ -0.44
CUX1-210ENST00000497815 USP27XA6NNY8 438 aa12.28□□□□□ -0.44
CUX1-210ENST00000497815 SPECC1L-ADORA2AF8WAN1 911 aa12.28□□□□□ -0.44
CUX1-210ENST00000497815 GFRA2O00451 464 aa12.28□□□□□ -0.44
CUX1-210ENST00000497815 HOXC11O43248 304 aaPredicted RBP12.28□□□□□ -0.44
CUX1-210ENST00000497815 CNTN5O94779 1100 aa12.28□□□□□ -0.44
CUX1-210ENST00000497815 LRIG2O94898 1065 aa12.28□□□□□ -0.44
CUX1-210ENST00000497815 FTCDO95954 541 aa12.28□□□□□ -0.44
CUX1-210ENST00000497815 PENKP01210 267 aaPredicted RBP12.28□□□□□ -0.44
CUX1-210ENST00000497815 KRT7P08729 469 aa12.28□□□□□ -0.44
CUX1-210ENST00000497815 CD72P21854 359 aa12.28□□□□□ -0.44
CUX1-210ENST00000497815 HOXD9P28356 352 aaPredicted RBP12.28□□□□□ -0.44
CUX1-210ENST00000497815 SLC6A11P48066 632 aa12.28□□□□□ -0.44
CUX1-210ENST00000497815 ZXDAP98168 799 aa12.28□□□□□ -0.44
CUX1-210ENST00000497815 KDSRQ06136 332 aa12.28□□□□□ -0.44
CUX1-210ENST00000497815 KRT81Q14533 505 aa12.28□□□□□ -0.44
CUX1-210ENST00000497815 GAB4Q2WGN9 574 aa12.28□□□□□ -0.44
CUX1-210ENST00000497815 BOLA3Q53S33 107 aa12.28□□□□□ -0.44
CUX1-210ENST00000497815 ZNF662Q6ZS27 426 aa12.28□□□□□ -0.44
CUX1-210ENST00000497815 TPRG1Q6ZUI0 275 aa12.28□□□□□ -0.44
CUX1-210ENST00000497815 TFAP2DQ7Z6R9 452 aa12.28□□□□□ -0.44
CUX1-210ENST00000497815 C12orf40Q86WS4 652 aa12.28□□□□□ -0.44
CUX1-210ENST00000497815 REXO1L1PQ8IX06 675 aa12.28□□□□□ -0.44
CUX1-210ENST00000497815 RHOT1Q8IXI2 618 aa12.28□□□□□ -0.44
CUX1-210ENST00000497815 ZNF683Q8IZ20 524 aa12.28□□□□□ -0.44
CUX1-210ENST00000497815 CARNMT1Q8N4J0 409 aa12.28□□□□□ -0.44
CUX1-210ENST00000497815 RNF10Q8N5U6 811 aaKnown RBP12.28□□□□□ -0.44
CUX1-210ENST00000497815 LRRC57Q8N9N7 239 aa12.28□□□□□ -0.44
CUX1-210ENST00000497815 TEKT4Q8WW24 435 aa12.28□□□□□ -0.44
CUX1-210ENST00000497815 TRIM44Q96DX7 344 aaPredicted RBP12.28□□□□□ -0.44
CUX1-210ENST00000497815 CHFRQ96EP1 664 aa12.28□□□□□ -0.44
CUX1-210ENST00000497815 CALR3Q96L12 384 aaKnown RBP12.28□□□□□ -0.44
CUX1-210ENST00000497815 EPAS1Q99814 870 aa12.28□□□□□ -0.44
CUX1-210ENST00000497815 ARHGEF3Q9NR81 526 aa12.28□□□□□ -0.44
CUX1-210ENST00000497815 DNAJC17Q9NVM6 304 aaKnown RBP12.28□□□□□ -0.44
CUX1-210ENST00000497815 MPP6Q9NZW5 540 aa12.28□□□□□ -0.44
CUX1-210ENST00000497815 MARK1Q9P0L2 795 aa12.28□□□□□ -0.44
CUX1-210ENST00000497815 CLEC4EQ9ULY5 219 aa12.28□□□□□ -0.44
CUX1-210ENST00000497815 COL4A3Q01955 1670 aa12.28□□□□□ -0.44
CUX1-210ENST00000497815 TICRRQ7Z2Z1 1910 aa12.27□□□□□ -0.44
CUX1-210ENST00000497815 PI4K2BG5E9Z4 385 aa12.27□□□□□ -0.45
CUX1-210ENST00000497815 EEF2KO00418 725 aaKnown RBP12.27□□□□□ -0.45
CUX1-210ENST00000497815 TRIM24O15164 1050 aa12.27□□□□□ -0.45
CUX1-210ENST00000497815 DAPK3O43293 454 aa12.27□□□□□ -0.45
CUX1-210ENST00000497815 DCXO43602 365 aa12.27□□□□□ -0.45
CUX1-210ENST00000497815 KRT1P04264 644 aa12.27□□□□□ -0.45
CUX1-210ENST00000497815 GOT1P17174 413 aa12.27□□□□□ -0.45
CUX1-210ENST00000497815 EPHB2P29323 1055 aa12.27□□□□□ -0.45
CUX1-210ENST00000497815 L1CAMP32004 1257 aa12.27□□□□□ -0.45
CUX1-210ENST00000497815 CTHP32929 405 aa12.27□□□□□ -0.45
CUX1-210ENST00000497815 MARCKSL1P49006 195 aa12.27□□□□□ -0.45
CUX1-210ENST00000497815 NUMBP49757 651 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms