RNA–Protein interactions for RNA: ENST00000496910.1

EXOSC3-208, Transcript of exosome component 3, humanhuman

TSL 2

Gene EXOSC3, Length 217 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-208ENST00000496910 UBE3BQ7Z3V4 1068 aa4□□□□□ -1.77
EXOSC3-208ENST00000496910 R3HCC1LQ7Z5L2 792 aaKnown RBP4□□□□□ -1.77
EXOSC3-208ENST00000496910 EPHX4Q8IUS5 362 aa4□□□□□ -1.77
EXOSC3-208ENST00000496910 CEP97Q8IW35 865 aa4□□□□□ -1.77
EXOSC3-208ENST00000496910 SCAMP5Q8TAC9 235 aa4□□□□□ -1.77
EXOSC3-208ENST00000496910 IL17DQ8TAD2 202 aa4□□□□□ -1.77
EXOSC3-208ENST00000496910 CSGALNACT1Q8TDX6 532 aa4□□□□□ -1.77
EXOSC3-208ENST00000496910 TFAP2CQ92754 450 aa4□□□□□ -1.77
EXOSC3-208ENST00000496910 NMD3Q96D46 503 aaKnown RBP4□□□□□ -1.77
EXOSC3-208ENST00000496910 RMDN1Q96DB5 314 aa4□□□□□ -1.77
EXOSC3-208ENST00000496910 FAM89AQ96GI7 184 aa4□□□□□ -1.77
EXOSC3-208ENST00000496910 CNDP2Q96KP4 475 aaKnown RBP4□□□□□ -1.77
EXOSC3-208ENST00000496910 SPATA17Q96L03 361 aa4□□□□□ -1.77
EXOSC3-208ENST00000496910 DDX23Q9BUQ8 820 aaKnown RBP4□□□□□ -1.77
EXOSC3-208ENST00000496910 C1orf43Q9BWL3 253 aa4□□□□□ -1.77
EXOSC3-208ENST00000496910 TEX101Q9BY14 249 aa4□□□□□ -1.77
EXOSC3-208ENST00000496910 GPR87Q9BY21 358 aa4□□□□□ -1.77
EXOSC3-208ENST00000496910 ITPAQ9BY32 194 aa4□□□□□ -1.77
EXOSC3-208ENST00000496910 OR10A4Q9H209 315 aa4□□□□□ -1.77
EXOSC3-208ENST00000496910 MRPL46Q9H2W6 279 aaKnown RBP4□□□□□ -1.77
EXOSC3-208ENST00000496910 TRPV4Q9HBA0 871 aa4□□□□□ -1.77
EXOSC3-208ENST00000496910 TMEM8AQ9HCN3 771 aa4□□□□□ -1.77
EXOSC3-208ENST00000496910 SERHLQ9NQF3 203 aa4□□□□□ -1.77
EXOSC3-208ENST00000496910 CCDC177Q9NQR7 707 aaPredicted RBP4□□□□□ -1.77
EXOSC3-208ENST00000496910 SIDT1Q9NXL6 827 aaKnown RBP4□□□□□ -1.77
EXOSC3-208ENST00000496910 WDR35Q9P2L0 1181 aa4□□□□□ -1.77
EXOSC3-208ENST00000496910 EIF2B4Q9UI10 523 aaKnown RBP4□□□□□ -1.77
EXOSC3-208ENST00000496910 HERC5Q9UII4 1024 aaKnown RBP4□□□□□ -1.77
EXOSC3-208ENST00000496910 SLC45A2Q9UMX9 530 aa4□□□□□ -1.77
EXOSC3-208ENST00000496910 RRP7AQ9Y3A4 280 aaKnown RBP4□□□□□ -1.77
EXOSC3-208ENST00000496910 TSC22D4Q9Y3Q8 395 aa4□□□□□ -1.77
EXOSC3-208ENST00000496910 SNX8Q9Y5X2 465 aa4□□□□□ -1.77
EXOSC3-208ENST00000496910 DHX29Q7Z478 1369 aaKnown RBP4□□□□□ -1.77
EXOSC3-208ENST00000496910 COL4A6Q14031 1691 aa4□□□□□ -1.77
EXOSC3-208ENST00000496910 FLT1P17948 1338 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 CLIP1P30622 1438 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 TNS3Q68CZ2 1445 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 A0A087WZ62 844 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 TRIM43BA6NCK2 446 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 CLCA1A8K7I4 914 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 AGAP14A8MT82 685 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 PRR5-ARHGAP8B1AHC4 643 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 C1QTNF3-AMACRE9PGA6 284 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 UBE2CO00762 179 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 AP3D1O14617 1153 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 MFAP3LO75121 409 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 GOSR1O95249 250 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 SCGB1D1O95968 90 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 MT-ND3P03897 115 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 AMHP03971 560 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 TK1P04183 234 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 FTH1P19P0C7X4 201 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 ALAS1P13196 640 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 IL1R1P14778 569 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 NR4A1P22736 598 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 GCSHP23434 173 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 APOBEC3AP31941 199 aaPredicted RBP3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 MLH1P40692 756 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 CHN2P52757 468 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 ARFIP2P53365 341 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 RAP2BP61225 183 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 CREB5Q02930 508 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 IDI1Q13907 227 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 EIF4A2Q14240 407 aaKnown RBP3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 SPDYAQ5MJ70 313 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 EMC10Q5UCC4 262 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 NFRKBQ6P4R8 1299 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 KLHL17Q6TDP4 642 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 IL27RAQ6UWB1 636 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 ZNF783Q6ZMS7 281 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 USP49Q70CQ1 688 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 ZNF365Q70YC5 407 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 MCM10Q7L590 875 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 SGMS1Q86VZ5 419 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 TMPRSS6Q8IU80 811 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 PRSS33Q8NF86 280 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 TBC1D22AQ8WUA7 517 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 DVL3Q92997 716 aaPredicted RBP3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 TRIM43Q96BQ3 446 aaPredicted RBP3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 LRRC46Q96FV0 321 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 SUCLG2Q96I99 432 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 FAM167AQ96KS9 214 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 PRPF18Q99633 342 aaKnown RBP3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 TRIM54Q9BYV2 358 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 USP44Q9H0E7 712 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 C2orf40Q9H1Z8 148 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 PABPC3Q9H361 631 aaKnown RBP3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 WDCPQ9H6R7 721 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 ZNF703Q9H7S9 590 aaPredicted RBP3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 SMURF2Q9HAU4 748 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 XAB2Q9HCS7 855 aaKnown RBP3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 NECTIN3Q9NQS3 549 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 RGL1Q9NZL6 768 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 JKAMPQ9P055 326 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 EPS15L1Q9UBC2 864 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 DKK2Q9UBU2 259 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 LPAR3Q9UBY5 353 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 RABL2BQ9UNT1 228 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 PCDHA1Q9Y5I3 950 aa3.99□□□□□ -1.77
EXOSC3-208ENST00000496910 CYP46A1Q9Y6A2 500 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms