RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	VTN	P04004	478 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	CYP3A4	P08684	503 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	STAG3L1	P0CL83	205 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	KLRC1	P26715	233 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	MTHFR	P42898	656 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	STT3A	P46977	705 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	GPR15	P49685	360 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	STAT5B	P51692	787 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	CRYBB1	P53674	252 aa	Predicted RBP	4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	RCAN1	P53805	252 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	NAPA	P54920	295 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	FAM189B	P81408	668 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	CYP4F8	P98187	520 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	SET	Q01105	290 aa	Predicted RBP	4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	PRKCE	Q02156	737 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	ITIH3	Q06033	890 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	GALNT1	Q10472	559 aa	Predicted RBP	4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	TARDBP	Q13148	414 aa	Known RBP eCLIP	4.69	□□□□□ -1.66	4e-7	■■□□□ 12.9
VPS52-222	ENST00000495981	DRP2	Q13474	957 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	PMS2P11	Q13670	270 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	SF3A2	Q15428	464 aa	Known RBP	4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	NR0B2	Q15466	257 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	SLC14A2	Q15849	920 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	ZNF528	Q3MIS6	628 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	ADCK5	Q3MIX3	580 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	KANK2	Q63ZY3	851 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	CASC1	Q6TDU7	716 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	LIPI	Q6XZB0	460 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	MMS22L	Q6ZRQ5	1243 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	SLC24A5	Q71RS6	500 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	CABP7	Q86V35	215 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	MIB1	Q86YT6	1006 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	LIX1L	Q8IVB5	337 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	SLC39A11	Q8N1S5	342 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	ZNF713	Q8N859	430 aa	Predicted RBP	4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	CDYL2	Q8N8U2	506 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	MRPL43	Q8N983	215 aa	Known RBP	4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	FANCB	Q8NB91	859 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	PDZD8	Q8NEN9	1154 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	PPP1R14C	Q8TAE6	165 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	SLC22A17	Q8WUG5	538 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	UBE2Q2	Q8WVN8	375 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	ATRIP	Q8WXE1	791 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	MRPS27	Q92552	414 aa	Known RBP	4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	RAB24	Q969Q5	203 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	ZC3H10	Q96K80	434 aa	Known RBP	4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	MRGPRX4	Q96LA9	322 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	CASD1	Q96PB1	797 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	ADAM2	Q99965	735 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	TTLL2	Q9BWV7	592 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	VN1R3	Q9BXE9	311 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	LRRC27	Q9C0I9	530 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	ZBP1	Q9H171	429 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	AZI2	Q9H6S1	392 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	ELAC1	Q9H777	363 aa	Known RBP	4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	ARHGEF3	Q9NR81	526 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	SPATA6	Q9NWH7	488 aa	Predicted RBP	4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	ZSCAN32	Q9NX65	697 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	DTL	Q9NZJ0	730 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	FTSJ1	Q9UET6	329 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	DBR1	Q9UK59	544 aa	Known RBP	4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	FBXO4	Q9UKT5	387 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	TPCN1	Q9ULQ1	816 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	PADI4	Q9UM07	663 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	ST3GAL5	Q9UNP4	418 aa		4.69	□□□□□ -1.66
VPS52-222	ENST00000495981	MYH15	Q9Y2K3	1946 aa		4.68	□□□□□ -1.66
VPS52-222	ENST00000495981	F5	P12259	2224 aa		4.68	□□□□□ -1.66
VPS52-222	ENST00000495981	MYO9A	B2RTY4	2548 aa		4.68	□□□□□ -1.66
VPS52-222	ENST00000495981		A0A1W2PQ27	194 aa		4.68	□□□□□ -1.66
VPS52-222	ENST00000495981		A0A1W2PQ64	194 aa		4.68	□□□□□ -1.66
VPS52-222	ENST00000495981		A0A1W2PQC6	194 aa		4.68	□□□□□ -1.66
VPS52-222	ENST00000495981		A0A1W2PQD8	194 aa		4.68	□□□□□ -1.66
VPS52-222	ENST00000495981	DENND3	A2RUS2	1198 aa		4.68	□□□□□ -1.66
VPS52-222	ENST00000495981	POM121B	A6NF01	834 aa		4.68	□□□□□ -1.66
VPS52-222	ENST00000495981	IPO5	O00410	1097 aa	Known RBP	4.68	□□□□□ -1.66
VPS52-222	ENST00000495981	N4BP3	O15049	544 aa		4.68	□□□□□ -1.66
VPS52-222	ENST00000495981	SGTA	O43765	313 aa		4.68	□□□□□ -1.66
VPS52-222	ENST00000495981	STBD1	O95210	358 aa		4.68	□□□□□ -1.66
VPS52-222	ENST00000495981	AGR2	O95994	175 aa		4.68	□□□□□ -1.66
VPS52-222	ENST00000495981	PROC	P04070	461 aa		4.68	□□□□□ -1.66
VPS52-222	ENST00000495981	RET	P07949	1114 aa		4.68	□□□□□ -1.66
VPS52-222	ENST00000495981	CD8B	P10966	210 aa		4.68	□□□□□ -1.66
VPS52-222	ENST00000495981	PDIA3	P30101	505 aa	Known RBP	4.68	□□□□□ -1.66
VPS52-222	ENST00000495981	CIITA	P33076	1130 aa		4.68	□□□□□ -1.66
VPS52-222	ENST00000495981	HSPA7	P48741	367 aa		4.68	□□□□□ -1.66
VPS52-222	ENST00000495981	GALK1	P51570	392 aa		4.68	□□□□□ -1.66
VPS52-222	ENST00000495981	GPC3	P51654	580 aa		4.68	□□□□□ -1.66
VPS52-222	ENST00000495981	HK2	P52789	917 aa		4.68	□□□□□ -1.66
VPS52-222	ENST00000495981	STARD6	P59095	220 aa		4.68	□□□□□ -1.66
VPS52-222	ENST00000495981	GPC5	P78333	572 aa		4.68	□□□□□ -1.66
VPS52-222	ENST00000495981	FMO1	Q01740	532 aa		4.68	□□□□□ -1.66
VPS52-222	ENST00000495981	CHRNE	Q04844	493 aa		4.68	□□□□□ -1.66
VPS52-222	ENST00000495981	STIL	Q15468	1287 aa		4.68	□□□□□ -1.66
VPS52-222	ENST00000495981	TARBP2	Q15633	366 aa	Known RBP	4.68	□□□□□ -1.66
VPS52-222	ENST00000495981	NPY5R	Q15761	445 aa		4.68	□□□□□ -1.66
VPS52-222	ENST00000495981	PDCD2	Q16342	344 aa	Predicted RBP	4.68	□□□□□ -1.66
VPS52-222	ENST00000495981	PFKFB3	Q16875	520 aa	Predicted RBP	4.68	□□□□□ -1.66
VPS52-222	ENST00000495981	COL28A1	Q2UY09	1125 aa		4.68	□□□□□ -1.66
VPS52-222	ENST00000495981	CR1L	Q2VPA4	569 aa		4.68	□□□□□ -1.66
VPS52-222	ENST00000495981	FAM160B1	Q5W0V3	765 aa		4.68	□□□□□ -1.66

Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms