RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 SH3RF2Q8TEC5 729 aa11.78□□□□□ -0.52
MCF2L-231ENST00000494043 USP13Q92995 863 aaPredicted RBP11.78□□□□□ -0.52
MCF2L-231ENST00000494043 TBC1D31Q96DN5 1066 aa11.78□□□□□ -0.52
MCF2L-231ENST00000494043 MSLNLQ96KJ4 702 aa11.78□□□□□ -0.52
MCF2L-231ENST00000494043 ZSWIM3Q96MP5 696 aa11.78□□□□□ -0.52
MCF2L-231ENST00000494043 AP1M1Q9BXS5 423 aa11.78□□□□□ -0.52
MCF2L-231ENST00000494043 MAK16Q9BXY0 300 aaKnown RBP11.78□□□□□ -0.52
MCF2L-231ENST00000494043 SMG9Q9H0W8 520 aaKnown RBP11.78□□□□□ -0.52
MCF2L-231ENST00000494043 PRDM16Q9HAZ2 1276 aa11.78□□□□□ -0.52
MCF2L-231ENST00000494043 ARHGEF4Q9NR80 690 aa11.78□□□□□ -0.52
MCF2L-231ENST00000494043 CFAP97Q9P2B7 532 aa11.78□□□□□ -0.52
MCF2L-231ENST00000494043 LSM7Q9UK45 103 aaKnown RBP11.78□□□□□ -0.52
MCF2L-231ENST00000494043 AGO1Q9UL18 857 aaKnown RBP11.78□□□□□ -0.52
MCF2L-231ENST00000494043 IGLV3-10A0A075B6K4 115 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 GOLGA6L10A0A0M3HER8 536 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 E9PAM4 449 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 LEFTY2O00292 366 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 RIOK3O14730 519 aaKnown RBP11.77□□□□□ -0.53
MCF2L-231ENST00000494043 APOL1O14791 398 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 DCLK1O15075 740 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 FGF10O15520 208 aaPredicted RBP11.77□□□□□ -0.53
MCF2L-231ENST00000494043 DAPK3O43293 454 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 TCF3P15923 654 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 ZFXP17010 805 aaPredicted RBP11.77□□□□□ -0.53
MCF2L-231ENST00000494043 TACR2P21452 398 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 AMPD1P23109 780 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 EPHB2P29323 1055 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 C2orf54Q08AI8 447 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 USP4Q13107 963 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 AUHQ13825 339 aaKnown RBP11.77□□□□□ -0.53
MCF2L-231ENST00000494043 CBX2Q14781 532 aaPredicted RBP11.77□□□□□ -0.53
MCF2L-231ENST00000494043 FAM133BQ5BKY9 247 aaKnown RBP11.77□□□□□ -0.53
MCF2L-231ENST00000494043 ATAT1Q5SQI0 421 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 RWDD4Q6NW29 188 aaKnown RBP11.77□□□□□ -0.53
MCF2L-231ENST00000494043 FBXL22Q6P050 247 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 LRRC31Q6UY01 552 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 HTR3DQ70Z44 454 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 GET4Q7L5D6 327 aaPredicted RBP11.77□□□□□ -0.53
MCF2L-231ENST00000494043 C14orf80Q86SX3 495 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 PLD5Q8N7P1 536 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 LRRN4CLQ8ND94 238 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 SPATA4Q8NEY3 305 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 ZSCAN18Q8TBC5 510 aaPredicted RBP11.77□□□□□ -0.53
MCF2L-231ENST00000494043 MYLIPQ8WY64 445 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 RPGRIP1Q96KN7 1286 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 RIPOR3Q96MK2 946 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 DDX50Q9BQ39 737 aaKnown RBP11.77□□□□□ -0.53
MCF2L-231ENST00000494043 RBM12Q9NTZ6 932 aaKnown RBP11.77□□□□□ -0.53
MCF2L-231ENST00000494043 TDP1Q9NUW8 608 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 GDE1Q9NZC3 331 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 PPARGC1AQ9UBK2 798 aaKnown RBP11.77□□□□□ -0.53
MCF2L-231ENST00000494043 STOML2Q9UJZ1 356 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 VANGL2Q9ULK5 521 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 CCL26Q9Y258 94 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 ZNF510Q9Y2H8 683 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 R3HDM2Q9Y2K5 976 aaKnown RBP11.77□□□□□ -0.53
MCF2L-231ENST00000494043 SH3BP1Q9Y3L3 701 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 NR2E1Q9Y466 385 aa11.77□□□□□ -0.53
MCF2L-231ENST00000494043 HELZP42694 1942 aaKnown RBP11.77□□□□□ -0.53
MCF2L-231ENST00000494043 GOLGA6L7A0A1B0GV03 622 aa11.76□□□□□ -0.53
MCF2L-231ENST00000494043 E2F8A0AVK6 867 aa11.76□□□□□ -0.53
MCF2L-231ENST00000494043 F5H5T6 163 aa11.76□□□□□ -0.53
MCF2L-231ENST00000494043 CCDC188H7C350 402 aa11.76□□□□□ -0.53
MCF2L-231ENST00000494043 APOC4-APOC2K7ER74 178 aa11.76□□□□□ -0.53
MCF2L-231ENST00000494043 SLU7O95391 586 aaKnown RBP11.76□□□□□ -0.53
MCF2L-231ENST00000494043 APOC2P02655 101 aa11.76□□□□□ -0.53
MCF2L-231ENST00000494043 ERCC2P18074 760 aa11.76□□□□□ -0.53
MCF2L-231ENST00000494043 TGM2P21980 687 aa11.76□□□□□ -0.53
MCF2L-231ENST00000494043 SLC6A4P31645 630 aa11.76□□□□□ -0.53
MCF2L-231ENST00000494043 MTHFRP42898 656 aa11.76□□□□□ -0.53
MCF2L-231ENST00000494043 ZNF77Q15935 545 aa11.76□□□□□ -0.53
MCF2L-231ENST00000494043 C5orf22Q49AR2 442 aa11.76□□□□□ -0.53
MCF2L-231ENST00000494043 ADGRF1Q5T601 910 aa11.76□□□□□ -0.53
MCF2L-231ENST00000494043 NCBP2-AS2Q69YL0 99 aa11.76□□□□□ -0.53
MCF2L-231ENST00000494043 Q7L0L9 218 aa11.76□□□□□ -0.53
MCF2L-231ENST00000494043 ARID3BQ8IVW6 561 aaPredicted RBP11.76□□□□□ -0.53
MCF2L-231ENST00000494043 FAM217AQ8IXS0 508 aa11.76□□□□□ -0.53
MCF2L-231ENST00000494043 LGI2Q8N0V4 545 aa11.76□□□□□ -0.53
MCF2L-231ENST00000494043 PRELID2Q8N945 189 aa11.76□□□□□ -0.53
MCF2L-231ENST00000494043 C12orf50Q8NA57 414 aaPredicted RBP11.76□□□□□ -0.53
MCF2L-231ENST00000494043 TTC13Q8NBP0 860 aa11.76□□□□□ -0.53
MCF2L-231ENST00000494043 SMRP1Q8NCR6 262 aa11.76□□□□□ -0.53
MCF2L-231ENST00000494043 RIN3Q8TB24 985 aa11.76□□□□□ -0.53
MCF2L-231ENST00000494043 FGF13Q92913 245 aa11.76□□□□□ -0.53
MCF2L-231ENST00000494043 HAUS1Q96CS2 278 aa11.76□□□□□ -0.53
MCF2L-231ENST00000494043 CDX2Q99626 313 aaPredicted RBP11.76□□□□□ -0.53
MCF2L-231ENST00000494043 CATSPERBQ9H7T0 1116 aa11.76□□□□□ -0.53
MCF2L-231ENST00000494043 KIF9Q9HAQ2 790 aa11.76□□□□□ -0.53
MCF2L-231ENST00000494043 ETNK2Q9NVF9 386 aa11.76□□□□□ -0.53
MCF2L-231ENST00000494043 STIM2Q9P246 746 aa11.76□□□□□ -0.53
MCF2L-231ENST00000494043 NUP210Q8TEM1 1887 aaPredicted RBP11.75□□□□□ -0.53
MCF2L-231ENST00000494043 DRGXA6NNA5 263 aa11.75□□□□□ -0.53
MCF2L-231ENST00000494043 WASH4PA8MWX3 477 aa11.75□□□□□ -0.53
MCF2L-231ENST00000494043 GFRA2O00451 464 aa11.75□□□□□ -0.53
MCF2L-231ENST00000494043 SCAMP3O14828 347 aaKnown RBP11.75□□□□□ -0.53
MCF2L-231ENST00000494043 MFSD11O43934 449 aa11.75□□□□□ -0.53
MCF2L-231ENST00000494043 PHF2O75151 1096 aa11.75□□□□□ -0.53
MCF2L-231ENST00000494043 PECAM1P16284 738 aaPredicted RBP11.75□□□□□ -0.53
MCF2L-231ENST00000494043 RHOQP17081 205 aa11.75□□□□□ -0.53
MCF2L-231ENST00000494043 IRAK1P51617 712 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms