RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 PALMDQ9NP74 551 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 TREM1Q9NP99 234 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 AGPAT5Q9NUQ2 364 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 STX18Q9P2W9 335 aaKnown RBP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 SEC63Q9UGP8 760 aaKnown RBP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 POLR3KQ9Y2Y1 108 aaPredicted RBP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 MRPS2Q9Y399 296 aaKnown RBP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 USP16Q9Y5T5 823 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 GPR45Q9Y5Y3 372 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 BZW2Q9Y6E2 419 aaKnown RBP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 SH3TC1Q8TE82 1336 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 COL15A1P39059 1388 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 CCDC154A6NI56 674 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 GOLGA8RI6L899 631 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 TERTO14746 1132 aaKnown RBP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 OGTO15294 1046 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 GAS7O60861 476 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 XYLBO75191 536 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 GUCY1B2O75343 617 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 ENTPD3O75355 529 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 MTX2O75431 263 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 WFS1O76024 890 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 PCDH8O95206 1070 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 CCNDBP1O95273 360 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 CSTAP01040 98 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 PDGFBP01127 241 aaPredicted RBP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 CYC1P08574 325 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 ERVK-10P10266 1014 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 ARP10275 920 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 CCDC130P13994 396 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 PDE6AP16499 860 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 PRKACAP17612 351 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 S100A1P23297 94 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 GCH1P30793 250 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 SLC5A2P31639 672 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 SCTRP47872 440 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 KCNC1P48547 511 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 MECP2P51608 486 aaKnown RBP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 ATP12AP54707 1039 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 ERVK-9P63128 1117 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 EEF1A1P68104 462 aaKnown RBP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 DLG4P78352 724 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 PRAMEP78395 509 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 GAD2Q05329 585 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 EEF1A2Q05639 463 aaKnown RBP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 SMARCB1Q12824 385 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 DAG1Q14118 895 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 NFKBIBQ15653 356 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 SGCAQ16586 387 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 MEP1BQ16820 701 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 ZNF628Q5EBL2 1059 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 FIGNQ5HY92 759 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 C10orf120Q5SQS8 335 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 CLVS2Q5SYC1 327 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 TTC22Q5TAA0 569 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 SH3PXD2AQ5TCZ1 1133 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 EEF1A1P5Q5VTE0 462 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 BROXQ5VW32 411 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 CASC4Q6P4E1 433 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 STXBP4Q6ZWJ1 553 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 PTF1AQ7RTS3 328 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 ZBTB33Q86T24 672 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 SLC51AQ86UW1 340 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 ZNF227Q86WZ6 799 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 RHPN2Q8IUC4 686 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 DIS3L2Q8IYB7 885 aaKnown RBP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 PHACTR4Q8IZ21 702 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 ST13P4Q8IZP2 240 aaPredicted RBP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 PYROXD2Q8N2H3 581 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 CSGALNACT2Q8N6G5 542 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 MARCH10Q8NA82 808 aaPredicted RBP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 SLC24A4Q8NFF2 622 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 PDCD6IPQ8WUM4 868 aaKnown RBP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 AFG1LQ8WV93 481 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 UBLCP1Q8WVY7 318 aaPredicted RBP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 KCNE4Q8WWG9 221 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 NCSTNQ92542 709 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 DPF2Q92785 391 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 NT5C3BQ969T7 300 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 RMDN1Q96DB5 314 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 SPDL1Q96EA4 605 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 SAAL1Q96ER3 474 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 TMA16Q96EY4 203 aaKnown RBP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 HMCESQ96FZ2 354 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 CHMP6Q96FZ7 201 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 TSNARE1Q96NA8 513 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 ABHD1Q96SE0 405 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 PLIN2Q99541 437 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 TMEM8AQ9HCN3 771 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 TUFT1Q9NNX1 390 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 MRPL40Q9NQ50 206 aaKnown RBP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 DDX28Q9NUL7 540 aaKnown RBP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 ZNF446Q9NWS9 450 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 CYP39A1Q9NYL5 469 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 PKD2L2Q9NZM6 624 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 H2AFY2Q9P0M6 372 aaPredicted RBP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 CYTH4Q9UIA0 394 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 TUBD1Q9UJT1 453 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 VANGL2Q9ULK5 521 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 PCDHA11Q9Y5I1 949 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms