RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 CCDC15Q0P6D6 951 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 WASHC5Q12768 1159 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 ARL13BQ3SXY8 428 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 LGSNQ5TDP6 509 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 ARMC3Q5W041 872 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 NUGGCQ68CJ6 796 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 RNF43Q68DV7 783 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 TIFABQ6ZNK6 161 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 HFE2Q6ZVN8 426 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 CHSY1Q86X52 802 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 THEM5Q8N1Q8 247 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 ZNF276Q8N554 614 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 GBP7Q8N8V2 638 aaPredicted RBP11.07□□□□□ -0.64
USP4-214ENST00000491791 RNF169Q8NCN4 708 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 CCDC110Q8TBZ0 833 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 ZNF398Q8TD17 642 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 MYLPFQ96A32 169 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 TTC17Q96AE7 1141 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 FAM149B1Q96BN6 582 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 FAM161BQ96MY7 647 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 COLEC11Q9BWP8 271 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 RASSF4Q9H2L5 321 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 DMAP1Q9NPF5 467 aaPredicted RBP11.07□□□□□ -0.64
USP4-214ENST00000491791 HAUS2Q9NVX0 235 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 FNIP2Q9P278 1114 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 KANSL3Q9P2N6 904 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 ARL2BPQ9Y2Y0 163 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 UNC80Q8N2C7 3258 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 TDRD15B5MCY1 1934 aaKnown RBP11.06□□□□□ -0.64
USP4-214ENST00000491791 A0A1W2PPM1 405 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 TNFRSF10BO14763 440 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 MFSD11O43934 449 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 DNAJC8O75937 253 aaPredicted RBP11.06□□□□□ -0.64
USP4-214ENST00000491791 MX2P20592 715 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 DNAJB2P25686 324 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 FOXN2P32314 431 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 CCNFP41002 786 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 IFNAR2P48551 515 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 SERPINB9P50453 376 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 NEK3P51956 506 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 CACNA2D1P54289 1103 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 NRLP54845 237 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 SLC20A2Q08357 652 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 GALNT2Q10471 571 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 DBN1Q16643 649 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 KBTBD12Q3ZCT8 623 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 TRIM60Q495X7 471 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 GALNTL6Q49A17 601 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 BRMS1LQ5PSV4 323 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 STXBP5Q5T5C0 1151 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 TTC39BQ5VTQ0 682 aaPredicted RBP11.06□□□□□ -0.64
USP4-214ENST00000491791 SLC24A5Q71RS6 500 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 GPRIN1Q7Z2K8 1008 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 SPATA21Q7Z572 469 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 LRRC6Q86X45 466 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 PYROXD2Q8N2H3 581 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 GSDMBQ8TAX9 411 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 HDAC11Q96DB2 347 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 P2RY11Q96G91 374 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 FUBP3Q96I24 572 aaKnown RBP eCLIP11.06□□□□□ -0.64
USP4-214ENST00000491791 GUCD1Q96NT3 240 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 TSGA13Q96PP4 275 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 TGS1Q96RS0 853 aaKnown RBP11.06□□□□□ -0.64
USP4-214ENST00000491791 HAPLN3Q96S86 360 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 KCNK16Q96T55 309 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 ELAC2Q9BQ52 826 aaKnown RBP11.06□□□□□ -0.64
USP4-214ENST00000491791 FTHL17Q9BXU8 183 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 MAGEB5Q9BZ81 275 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 ELAC1Q9H777 363 aaKnown RBP11.06□□□□□ -0.64
USP4-214ENST00000491791 ARHGEF38Q9NXL2 777 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 IL37Q9NZH6 218 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 ZC3H7BQ9UGR2 993 aaKnown RBP11.06□□□□□ -0.64
USP4-214ENST00000491791 TRHDEQ9UKU6 1024 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 CHMP2BQ9UQN3 213 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 PCDHA11Q9Y5I1 949 aa11.06□□□□□ -0.64
USP4-214ENST00000491791 CASTOR2A6NHX0 329 aa11.05□□□□□ -0.64
USP4-214ENST00000491791 SDR42E2A6NKP2 422 aa11.05□□□□□ -0.64
USP4-214ENST00000491791 FOXO6A8MYZ6 492 aa11.05□□□□□ -0.64
USP4-214ENST00000491791 I6L893 689 aaPredicted RBP11.05□□□□□ -0.64
USP4-214ENST00000491791 AP3B1O00203 1094 aa11.05□□□□□ -0.64
USP4-214ENST00000491791 CAPN9O14815 690 aa11.05□□□□□ -0.64
USP4-214ENST00000491791 KLF11O14901 512 aa11.05□□□□□ -0.64
USP4-214ENST00000491791 TRIM66O15016 1216 aa11.05□□□□□ -0.64
USP4-214ENST00000491791 CACNG3O60359 315 aa11.05□□□□□ -0.64
USP4-214ENST00000491791 EDF1O60869 148 aaKnown RBP11.05□□□□□ -0.64
USP4-214ENST00000491791 KRT37O76014 449 aa11.05□□□□□ -0.64
USP4-214ENST00000491791 B3GAT3O94766 335 aa11.05□□□□□ -0.64
USP4-214ENST00000491791 APRTP07741 180 aa11.05□□□□□ -0.64
USP4-214ENST00000491791 INHBAP08476 426 aa11.05□□□□□ -0.64
USP4-214ENST00000491791 SNRPAP09012 282 aaKnown RBP11.05□□□□□ -0.64
USP4-214ENST00000491791 CKBP12277 381 aa11.05□□□□□ -0.64
USP4-214ENST00000491791 KRT4P19013 534 aa11.05□□□□□ -0.64
USP4-214ENST00000491791 CA4P22748 312 aa11.05□□□□□ -0.64
USP4-214ENST00000491791 SERPINB6P35237 376 aa11.05□□□□□ -0.64
USP4-214ENST00000491791 RPA3P35244 121 aaPredicted RBP11.05□□□□□ -0.64
USP4-214ENST00000491791 ETV4P43268 484 aa11.05□□□□□ -0.64
USP4-214ENST00000491791 PPP2R5DQ14738 602 aa11.05□□□□□ -0.64
USP4-214ENST00000491791 LRRC14Q15048 493 aa11.05□□□□□ -0.64
USP4-214ENST00000491791 SHHQ15465 462 aa11.05□□□□□ -0.64
USP4-214ENST00000491791 HP1BP3Q5SSJ5 553 aaPredicted RBP11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms