RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 TMEM204Q9BSN7 226 aa3.53□□□□□ -1.84
CPSF3-205ENST00000489629 EIF2AQ9BY44 585 aaKnown RBP3.53□□□□□ -1.84
CPSF3-205ENST00000489629 MYLK2Q9H1R3 596 aa3.53□□□□□ -1.84
CPSF3-205ENST00000489629 AAMDCQ9H7C9 122 aa3.53□□□□□ -1.84
CPSF3-205ENST00000489629 IL21RQ9HBE5 538 aa3.53□□□□□ -1.84
CPSF3-205ENST00000489629 SPAG4Q9NPE6 437 aa3.53□□□□□ -1.84
CPSF3-205ENST00000489629 FSCN3Q9NQT6 498 aa3.53□□□□□ -1.84
CPSF3-205ENST00000489629 PCDHA7Q9UN72 937 aa3.53□□□□□ -1.84
CPSF3-205ENST00000489629 EME2A4GXA9 379 aaPredicted RBP3.52□□□□□ -1.85
CPSF3-205ENST00000489629 TNFRSF13BO14836 293 aaPredicted RBP3.52□□□□□ -1.85
CPSF3-205ENST00000489629 TAF5LO75529 589 aa3.52□□□□□ -1.85
CPSF3-205ENST00000489629 CNTN5O94779 1100 aa3.52□□□□□ -1.85
CPSF3-205ENST00000489629 IDEP14735 1019 aa3.52□□□□□ -1.85
CPSF3-205ENST00000489629 TNFRSF8P28908 595 aa3.52□□□□□ -1.85
CPSF3-205ENST00000489629 NSUN2Q08J23 767 aaKnown RBP eCLIP3.52□□□□□ -1.85
CPSF3-205ENST00000489629 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.52□□□□□ -1.85
CPSF3-205ENST00000489629 HIBCHQ6NVY1 386 aaPredicted RBP3.52□□□□□ -1.85
CPSF3-205ENST00000489629 WDR75Q8IWA0 830 aaKnown RBP3.52□□□□□ -1.85
CPSF3-205ENST00000489629 TMEM174Q8WUU8 243 aa3.52□□□□□ -1.85
CPSF3-205ENST00000489629 INPP5DQ92835 1189 aa3.52□□□□□ -1.85
CPSF3-205ENST00000489629 MIB2Q96AX9 1013 aa3.52□□□□□ -1.85
CPSF3-205ENST00000489629 EIF3CQ99613 913 aaKnown RBP3.52□□□□□ -1.85
CPSF3-205ENST00000489629 HTATIP2Q9BUP3 242 aa3.52□□□□□ -1.85
CPSF3-205ENST00000489629 ARHGAP39Q9C0H5 1083 aa3.52□□□□□ -1.85
CPSF3-205ENST00000489629 SLCO5A1Q9H2Y9 848 aa3.52□□□□□ -1.85
CPSF3-205ENST00000489629 DTNAQ9Y4J8 743 aa3.52□□□□□ -1.85
CPSF3-205ENST00000489629 TRIP12Q14669 1992 aaPredicted RBP3.52□□□□□ -1.85
CPSF3-205ENST00000489629 EVPLQ92817 2033 aa3.51□□□□□ -1.85
CPSF3-205ENST00000489629 FAM234BA2RU67 622 aa3.51□□□□□ -1.85
CPSF3-205ENST00000489629 H0YGN5 161 aa3.51□□□□□ -1.85
CPSF3-205ENST00000489629 MDM4O15151 490 aa3.51□□□□□ -1.85
CPSF3-205ENST00000489629 ITGA5P08648 1049 aa3.51□□□□□ -1.85
CPSF3-205ENST00000489629 TGM2P21980 687 aa3.51□□□□□ -1.85
CPSF3-205ENST00000489629 CDC25AP30304 524 aa3.51□□□□□ -1.85
CPSF3-205ENST00000489629 SLC37A1P57057 533 aa3.51□□□□□ -1.85
CPSF3-205ENST00000489629 P3H1Q32P28 736 aa3.51□□□□□ -1.85
CPSF3-205ENST00000489629 ARL13BQ3SXY8 428 aa3.51□□□□□ -1.85
CPSF3-205ENST00000489629 FMNL3Q8IVF7 1028 aa3.51□□□□□ -1.85
CPSF3-205ENST00000489629 DCP1BQ8IZD4 617 aaKnown RBP3.51□□□□□ -1.85
CPSF3-205ENST00000489629 SLC22A17Q8WUG5 538 aa3.51□□□□□ -1.85
CPSF3-205ENST00000489629 OIT3Q8WWZ8 545 aa3.51□□□□□ -1.85
CPSF3-205ENST00000489629 TBCBQ99426 244 aa3.51□□□□□ -1.85
CPSF3-205ENST00000489629 ABHD14AQ9BUJ0 271 aa3.51□□□□□ -1.85
CPSF3-205ENST00000489629 DDX24Q9GZR7 859 aaKnown RBP eCLIP3.51□□□□□ -1.85
CPSF3-205ENST00000489629 MAP6D1Q9H9H5 199 aa3.51□□□□□ -1.85
CPSF3-205ENST00000489629 PRDM16Q9HAZ2 1276 aa3.51□□□□□ -1.85
CPSF3-205ENST00000489629 STARD7Q9NQZ5 370 aa3.51□□□□□ -1.85
CPSF3-205ENST00000489629 FBXO28Q9NVF7 368 aa3.51□□□□□ -1.85
CPSF3-205ENST00000489629 SELENONQ9NZV5 590 aa3.51□□□□□ -1.85
CPSF3-205ENST00000489629 UBE2J1Q9Y385 318 aaPredicted RBP3.51□□□□□ -1.85
CPSF3-205ENST00000489629 SHROOM4Q9ULL8 1493 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 LOC105369274A0A096LPK9 316 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 LOC102723532A0A0G2JNH3 316 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 DPPA5A6NC42 116 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 J3KTA2 159 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 RHODO00212 210 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 SRGAP2BP0DMP2 458 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 HARSP12081 509 aaKnown RBP3.5□□□□□ -1.85
CPSF3-205ENST00000489629 IGFBP2P18065 325 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 HOXA11P31270 313 aaPredicted RBP3.5□□□□□ -1.85
CPSF3-205ENST00000489629 PMS2P11Q13670 270 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 CBFBQ13951 182 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 CSHL1Q14406 222 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 SLC35G1Q2M3R5 365 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 ZNF324BQ6AW86 544 aaPredicted RBP3.5□□□□□ -1.85
CPSF3-205ENST00000489629 WDR93Q6P2C0 686 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 PDXDC1Q6P996 788 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 LRIG3Q6UXM1 1119 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 SLC39A5Q6ZMH5 540 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 KRT27Q7Z3Y8 459 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 GPSM1Q86YR5 675 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 RASGRP3Q8IV61 690 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 ADGRF3Q8IZF5 1079 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 OR4N4Q8N0Y3 316 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 FBXL14Q8N1E6 418 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 TXLNBQ8N3L3 684 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 IQCF1Q8N6M8 205 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 BRI3BPQ8WY22 251 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 LPAR1Q92633 364 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 CENPIQ92674 756 aaPredicted RBP3.5□□□□□ -1.85
CPSF3-205ENST00000489629 KAT2AQ92830 837 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 URB1-AS1Q96HZ7 61 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 NTPCRQ9BSD7 190 aaKnown RBP3.5□□□□□ -1.85
CPSF3-205ENST00000489629 SARGQ9BW04 601 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 NAA15Q9BXJ9 866 aaKnown RBP3.5□□□□□ -1.85
CPSF3-205ENST00000489629 RBM38Q9H0Z9 239 aaKnown RBP3.5□□□□□ -1.85
CPSF3-205ENST00000489629 SIRT3Q9NTG7 399 aaPredicted RBP3.5□□□□□ -1.85
CPSF3-205ENST00000489629 CA14Q9ULX7 337 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 FAM50BQ9Y247 325 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 PCDHB7Q9Y5E2 793 aa3.5□□□□□ -1.85
CPSF3-205ENST00000489629 LMTK3Q96Q04 1460 aa3.49□□□□□ -1.85
CPSF3-205ENST00000489629 CLEC18AA5D8T8 446 aa3.49□□□□□ -1.85
CPSF3-205ENST00000489629 FOXO6A8MYZ6 492 aa3.49□□□□□ -1.85
CPSF3-205ENST00000489629 NKX2-8O15522 239 aa3.49□□□□□ -1.85
CPSF3-205ENST00000489629 NCK2O43639 380 aa3.49□□□□□ -1.85
CPSF3-205ENST00000489629 FGF18O76093 207 aa3.49□□□□□ -1.85
CPSF3-205ENST00000489629 NTSR2O95665 410 aa3.49□□□□□ -1.85
CPSF3-205ENST00000489629 TGFB3P10600 412 aa3.49□□□□□ -1.85
CPSF3-205ENST00000489629 CIITAP33076 1130 aa3.49□□□□□ -1.85
CPSF3-205ENST00000489629 RFX2P48378 723 aa3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms