RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 FARP1Q9Y4F1 1045 aaPredicted RBP12.56□□□□□ -0.4
HDAC6-230ENST00000488543 INSL6Q9Y581 213 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 SZT2Q5T011 3432 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 MTMR11A4FU01 709 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 SRRM3A6NNA2 597 aaPredicted RBP12.55□□□□□ -0.4
HDAC6-230ENST00000488543 AMPD1P23109 780 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 SLC5A3P53794 718 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 GBE1Q04446 702 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 MPP2Q14168 576 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 BSPRYQ5W0U4 402 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 NCBP2-AS2Q69YL0 99 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 DARS2Q6PI48 645 aaKnown RBP12.55□□□□□ -0.4
HDAC6-230ENST00000488543 PRCCQ92733 491 aaPredicted RBP12.55□□□□□ -0.4
HDAC6-230ENST00000488543 NTAN1Q96AB6 310 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 SLC9A7Q96T83 725 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 FGFR1OP2Q9NVK5 253 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.55□□□□□ -0.4
HDAC6-230ENST00000488543 PCDHB5Q9Y5E4 795 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 HEY1Q9Y5J3 304 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 GREB1Q4ZG55 1949 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 H7C0C1 242 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 FGF18O76093 207 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 MAP3K6O95382 1288 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 ADRA1BP35368 520 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 ATP5OP48047 213 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 USP46P62068 366 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 SCAPQ12770 1279 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 MORF4L2Q15014 288 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 NFE2Q16621 373 aaPredicted RBP12.55□□□□□ -0.4
HDAC6-230ENST00000488543 MGAT5BQ3V5L5 792 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 BEND5Q7L4P6 421 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 TAC4Q86UU9 113 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 RELL1Q8IUW5 271 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 KLHL23Q8NBE8 558 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 RTP4Q96DX8 246 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 THOC1Q96FV9 657 aaKnown RBP12.55□□□□□ -0.4
HDAC6-230ENST00000488543 RAD9AQ99638 391 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 SEPT5Q99719 369 aaPredicted RBP12.55□□□□□ -0.4
HDAC6-230ENST00000488543 FOXP3Q9BZS1 431 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 ALG13Q9NP73 1137 aaKnown RBP12.55□□□□□ -0.4
HDAC6-230ENST00000488543 KCNK9Q9NPC2 374 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 RRN3Q9NYV6 651 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 NINJ2Q9NZG7 142 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 MTRRQ9UBK8 725 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 FBXW11Q9UKB1 542 aa12.55□□□□□ -0.4
HDAC6-230ENST00000488543 BCLAF3A2AJT9 711 aaKnown RBP12.54□□□□□ -0.4
HDAC6-230ENST00000488543 CCT8L1PA6NM43 557 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 TCP11X1B4DZS4 312 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 H7C4K7 107 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 IGLV3-25P01717 112 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 SEMA3BQ13214 749 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 ANKRD22Q5VYY1 191 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 CAPN12Q6ZSI9 719 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 SCD5Q86SK9 330 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 RNF139Q8WU17 664 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 LRRN4Q8WUT4 740 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 CPT1BQ92523 772 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 FUBP3Q96I24 572 aaKnown RBP eCLIP12.54□□□□□ -0.4
HDAC6-230ENST00000488543 C9orf72Q96LT7 481 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 ARHGEF4Q9NR80 690 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 DDIT4Q9NX09 232 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 GGA2Q9UJY4 613 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 SHOC2Q9UQ13 582 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 PCDHB12Q9Y5F1 795 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 TMEM120BA0PK00 339 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 FAM72CH0Y354 149 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 AGTP01019 485 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 ZFXP17010 805 aaPredicted RBP12.54□□□□□ -0.4
HDAC6-230ENST00000488543 RBL1P28749 1068 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 STIP1P31948 543 aaKnown RBP12.54□□□□□ -0.4
HDAC6-230ENST00000488543 GLUD2P49448 558 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 CXCR3P49682 368 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 AIF1P55008 147 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 DSG1Q02413 1049 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 EIF4EBP2Q13542 120 aaPredicted RBP12.54□□□□□ -0.4
HDAC6-230ENST00000488543 DPYSQ14117 519 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 C6orf118Q5T5N4 469 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 FAM72AQ5TYM5 149 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 SLC8B1Q6J4K2 584 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 FAM72DQ6L9T8 149 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 DDX53Q86TM3 631 aaKnown RBP12.54□□□□□ -0.4
HDAC6-230ENST00000488543 FAM72BQ86X60 149 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 PARP9Q8IXQ6 854 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 NAT8LQ8N9F0 302 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 DQX1Q8TE96 717 aaKnown RBP12.54□□□□□ -0.4
HDAC6-230ENST00000488543 DYDC1Q8WWB3 177 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 TMEM109Q9BVC6 243 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 NUDT5Q9UKK9 219 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 REV3LO60673 3130 aa12.54□□□□□ -0.4
HDAC6-230ENST00000488543 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.53□□□□□ -0.4
HDAC6-230ENST00000488543 H3BRJ5 948 aa12.53□□□□□ -0.4
HDAC6-230ENST00000488543 SEC24AO95486 1093 aa12.53□□□□□ -0.4
HDAC6-230ENST00000488543 TTC4O95801 387 aa12.53□□□□□ -0.4
HDAC6-230ENST00000488543 SPATA31D3P0C874 917 aa12.53□□□□□ -0.4
HDAC6-230ENST00000488543 CA8P35219 290 aa12.53□□□□□ -0.4
HDAC6-230ENST00000488543 ARL4AP40617 200 aa12.53□□□□□ -0.4
HDAC6-230ENST00000488543 MAGEA10P43363 369 aaPredicted RBP12.53□□□□□ -0.4
HDAC6-230ENST00000488543 GAD2Q05329 585 aa12.53□□□□□ -0.4
HDAC6-230ENST00000488543 SHHQ15465 462 aa12.53□□□□□ -0.4
HDAC6-230ENST00000488543 EFHC2Q5JST6 749 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms