RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 AASDHPPTQ9NRN7 309 aa3.78□□□□□ -1.8
SMC4-220ENST00000488017 COL20A1Q9P218 1284 aa3.78□□□□□ -1.8
SMC4-220ENST00000488017 USP35Q9P2H5 1018 aa3.78□□□□□ -1.8
SMC4-220ENST00000488017 TBC1D14Q9P2M4 693 aa3.78□□□□□ -1.8
SMC4-220ENST00000488017 CBFA2T3O75081 653 aa3.77□□□□□ -1.81
SMC4-220ENST00000488017 LCATP04180 440 aa3.77□□□□□ -1.81
SMC4-220ENST00000488017 SP1P08047 785 aa3.77□□□□□ -1.81
SMC4-220ENST00000488017 AGTR2P50052 363 aa3.77□□□□□ -1.81
SMC4-220ENST00000488017 PDLIM4P50479 330 aa3.77□□□□□ -1.81
SMC4-220ENST00000488017 EEF1A2Q05639 463 aaKnown RBP3.77□□□□□ -1.81
SMC4-220ENST00000488017 ZRSR1Q15695 479 aaKnown RBP3.77□□□□□ -1.81
SMC4-220ENST00000488017 FAM90A2PQ658T7 463 aa3.77□□□□□ -1.81
SMC4-220ENST00000488017 ZBTB34Q8NCN2 500 aa3.77□□□□□ -1.81
SMC4-220ENST00000488017 PMM1Q92871 262 aa3.77□□□□□ -1.81
SMC4-220ENST00000488017 RTP4Q96DX8 246 aa3.77□□□□□ -1.81
SMC4-220ENST00000488017 HOOK2Q96ED9 719 aa3.77□□□□□ -1.81
SMC4-220ENST00000488017 WDR24Q96S15 920 aa3.77□□□□□ -1.81
SMC4-220ENST00000488017 SPRY4Q9C004 299 aa3.77□□□□□ -1.81
SMC4-220ENST00000488017 SLC25A32Q9H2D1 315 aa3.77□□□□□ -1.81
SMC4-220ENST00000488017 DDX31Q9H8H2 851 aaKnown RBP3.77□□□□□ -1.81
SMC4-220ENST00000488017 ITGB1BP2Q9UKP3 347 aa3.77□□□□□ -1.81
SMC4-220ENST00000488017 MAGED2Q9UNF1 606 aaPredicted RBP3.77□□□□□ -1.81
SMC4-220ENST00000488017 SLC8A2Q9UPR5 921 aa3.77□□□□□ -1.81
SMC4-220ENST00000488017 FOXO6A8MYZ6 492 aa3.76□□□□□ -1.81
SMC4-220ENST00000488017 ZBTB11O95625 1053 aaPredicted RBP3.76□□□□□ -1.81
SMC4-220ENST00000488017 YY1P25490 414 aa3.76□□□□□ -1.81
SMC4-220ENST00000488017 CLCN5P51795 746 aa3.76□□□□□ -1.81
SMC4-220ENST00000488017 GPR18Q14330 331 aa3.76□□□□□ -1.81
SMC4-220ENST00000488017 BRDTQ58F21 947 aaPredicted RBP3.76□□□□□ -1.81
SMC4-220ENST00000488017 DNTTIP2Q5QJE6 756 aaKnown RBP3.76□□□□□ -1.81
SMC4-220ENST00000488017 CEP85LQ5SZL2 805 aa3.76□□□□□ -1.81
SMC4-220ENST00000488017 HMBOX1Q6NT76 420 aa3.76□□□□□ -1.81
SMC4-220ENST00000488017 APOA5Q6Q788 366 aa3.76□□□□□ -1.81
SMC4-220ENST00000488017 H1FNTQ75WM6 255 aaPredicted RBP3.76□□□□□ -1.81
SMC4-220ENST00000488017 OVCH2Q7RTZ1 564 aa3.76□□□□□ -1.81
SMC4-220ENST00000488017 GPSM1Q86YR5 675 aa3.76□□□□□ -1.81
SMC4-220ENST00000488017 CADM3Q8N126 398 aa3.76□□□□□ -1.81
SMC4-220ENST00000488017 OR52N4Q8NGI2 321 aa3.76□□□□□ -1.81
SMC4-220ENST00000488017 GABPB2Q8TAK5 448 aaPredicted RBP3.76□□□□□ -1.81
SMC4-220ENST00000488017 GLMPQ8WWB7 406 aa3.76□□□□□ -1.81
SMC4-220ENST00000488017 OVCA2Q8WZ82 227 aa3.76□□□□□ -1.81
SMC4-220ENST00000488017 TAF15Q92804 592 aaKnown RBP eCLIP3.76□□□□□ -1.81
SMC4-220ENST00000488017 TMEM60Q9H2L4 133 aa3.76□□□□□ -1.81
SMC4-220ENST00000488017 RETREG1Q9H6L5 497 aa3.76□□□□□ -1.81
SMC4-220ENST00000488017 TPCN1Q9ULQ1 816 aa3.76□□□□□ -1.81
SMC4-220ENST00000488017 SCN5AQ14524 2016 aa3.75□□□□□ -1.81
SMC4-220ENST00000488017 LOC102724159A0A0B4J2E5 919 aa3.75□□□□□ -1.81
SMC4-220ENST00000488017 PLSCR5A0PG75 271 aa3.75□□□□□ -1.81
SMC4-220ENST00000488017 PRPF3O43395 683 aaKnown RBP3.75□□□□□ -1.81
SMC4-220ENST00000488017 IL18RAPO95256 599 aa3.75□□□□□ -1.81
SMC4-220ENST00000488017 SERPINB2P05120 415 aa3.75□□□□□ -1.81
SMC4-220ENST00000488017 RFPL3SP0C7P2 107 aa3.75□□□□□ -1.81
SMC4-220ENST00000488017 CARSP49589 748 aaKnown RBP3.75□□□□□ -1.81
SMC4-220ENST00000488017 FMO1Q01740 532 aa3.75□□□□□ -1.81
SMC4-220ENST00000488017 RBM39Q14498 530 aaKnown RBP3.75□□□□□ -1.81
SMC4-220ENST00000488017 PWP2Q15269 919 aaKnown RBP3.75□□□□□ -1.81
SMC4-220ENST00000488017 ELF2Q15723 593 aa3.75□□□□□ -1.81
SMC4-220ENST00000488017 FNBP1LQ5T0N5 605 aa3.75□□□□□ -1.81
SMC4-220ENST00000488017 C8orf82Q6P1X6 216 aaPredicted RBP3.75□□□□□ -1.81
SMC4-220ENST00000488017 ACSM6Q6P461 480 aa3.75□□□□□ -1.81
SMC4-220ENST00000488017 SLC16A12Q6ZSM3 486 aa3.75□□□□□ -1.81
SMC4-220ENST00000488017 UNC13DQ70J99 1090 aa3.75□□□□□ -1.81
SMC4-220ENST00000488017 CYB5R4Q7L1T6 521 aa3.75□□□□□ -1.81
SMC4-220ENST00000488017 KIAA0319LQ8IZA0 1049 aa3.75□□□□□ -1.81
SMC4-220ENST00000488017 CLIP4Q8N3C7 705 aa3.75□□□□□ -1.81
SMC4-220ENST00000488017 SDR16C5Q8N3Y7 309 aa3.75□□□□□ -1.81
SMC4-220ENST00000488017 RFLNBQ8N5W9 214 aa3.75□□□□□ -1.81
SMC4-220ENST00000488017 HOMER2Q9NSB8 354 aa3.75□□□□□ -1.81
SMC4-220ENST00000488017 CFAP69A5D8W1 941 aa3.74□□□□□ -1.81
SMC4-220ENST00000488017 PRR23AA6NEV1 266 aa3.74□□□□□ -1.81
SMC4-220ENST00000488017 IGLV2-11P01706 119 aa3.74□□□□□ -1.81
SMC4-220ENST00000488017 TRAF1Q13077 416 aa3.74□□□□□ -1.81
SMC4-220ENST00000488017 SEMA3BQ13214 749 aa3.74□□□□□ -1.81
SMC4-220ENST00000488017 BFSP2Q13515 415 aa3.74□□□□□ -1.81
SMC4-220ENST00000488017 CCDC6Q16204 474 aa3.74□□□□□ -1.81
SMC4-220ENST00000488017 KIF19Q2TAC6 998 aa3.74□□□□□ -1.81
SMC4-220ENST00000488017 KDELC2Q7Z4H8 507 aa3.74□□□□□ -1.81
SMC4-220ENST00000488017 CLASRPQ8N2M8 674 aaKnown RBP3.74□□□□□ -1.81
SMC4-220ENST00000488017 SPEM1Q8N4L4 309 aa3.74□□□□□ -1.81
SMC4-220ENST00000488017 ABHD5Q8WTS1 349 aa3.74□□□□□ -1.81
SMC4-220ENST00000488017 RHOBTB2Q9BYZ6 727 aa3.74□□□□□ -1.81
SMC4-220ENST00000488017 TCF7L2Q9NQB0 619 aa3.74□□□□□ -1.81
SMC4-220ENST00000488017 ZNF212Q9UDV6 495 aa3.74□□□□□ -1.81
SMC4-220ENST00000488017 SNRNP70P08621 437 aaKnown RBP3.73□□□□□ -1.81
SMC4-220ENST00000488017 DRD1P21728 446 aa3.73□□□□□ -1.81
SMC4-220ENST00000488017 ZP1P60852 638 aa3.73□□□□□ -1.81
SMC4-220ENST00000488017 CNN3Q15417 329 aaKnown RBP3.73□□□□□ -1.81
SMC4-220ENST00000488017 TDRD12Q587J7 1177 aaKnown RBP3.73□□□□□ -1.81
SMC4-220ENST00000488017 ADAM5Q6NVV9 412 aa3.73□□□□□ -1.81
SMC4-220ENST00000488017 TLDC1Q6P9B6 456 aa3.73□□□□□ -1.81
SMC4-220ENST00000488017 DSTYKQ6XUX3 929 aa3.73□□□□□ -1.81
SMC4-220ENST00000488017 PAQR4Q8N4S7 273 aaPredicted RBP3.73□□□□□ -1.81
SMC4-220ENST00000488017 ADAMTS14Q8WXS8 1223 aa3.73□□□□□ -1.81
SMC4-220ENST00000488017 GPR78Q96P69 363 aa3.73□□□□□ -1.81
SMC4-220ENST00000488017 L1RE1Q9UN81 338 aa3.73□□□□□ -1.81
SMC4-220ENST00000488017 NOTCH2Q04721 2471 aa3.73□□□□□ -1.81
SMC4-220ENST00000488017 SBNO2Q9Y2G9 1366 aa3.73□□□□□ -1.81
SMC4-220ENST00000488017 A0A1B0GVY2 172 aa3.72□□□□□ -1.81
SMC4-220ENST00000488017 E2F8A0AVK6 867 aa3.72□□□□□ -1.81
SMC4-220ENST00000488017 ERI2A8K979 691 aaKnown RBP3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms