RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 TMEM25Q86YD3 366 aa17.7■□□□□ 0.42
VIM-205ENST00000485947 SIX6OS1Q8N1H7 587 aa17.7■□□□□ 0.42
VIM-205ENST00000485947 PHTF2Q8N3S3 785 aa17.7■□□□□ 0.42
VIM-205ENST00000485947 UBA3Q8TBC4 463 aa17.7■□□□□ 0.42
VIM-205ENST00000485947 SLC35G2Q8TBE7 412 aa17.7■□□□□ 0.42
VIM-205ENST00000485947 SLC35F5Q8WV83 523 aa17.7■□□□□ 0.42
VIM-205ENST00000485947 ZC3H10Q96K80 434 aaKnown RBP17.7■□□□□ 0.42
VIM-205ENST00000485947 ABCC13Q9NSE7 274 aa17.7■□□□□ 0.42
VIM-205ENST00000485947 CTTNBP2NLQ9P2B4 639 aa17.7■□□□□ 0.42
VIM-205ENST00000485947 CYTH4Q9UIA0 394 aa17.7■□□□□ 0.42
VIM-205ENST00000485947 SALL4Q9UJQ4 1053 aa17.7■□□□□ 0.42
VIM-205ENST00000485947 STARD13Q9Y3M8 1113 aa17.7■□□□□ 0.42
VIM-205ENST00000485947 PAXBP1Q9Y5B6 917 aa17.7■□□□□ 0.42
VIM-205ENST00000485947 STC2O76061 302 aa17.69■□□□□ 0.42
VIM-205ENST00000485947 ALDH1A2O94788 518 aa17.69■□□□□ 0.42
VIM-205ENST00000485947 MOCS3O95396 460 aa17.69■□□□□ 0.42
VIM-205ENST00000485947 IRF1P10914 325 aa17.69■□□□□ 0.42
VIM-205ENST00000485947 KIR2DL1P43626 348 aaPredicted RBP17.69■□□□□ 0.42
VIM-205ENST00000485947 NOP2P46087 812 aaKnown RBP17.69■□□□□ 0.42
VIM-205ENST00000485947 SLC6A11P48066 632 aa17.69■□□□□ 0.42
VIM-205ENST00000485947 RPL34P49207 117 aaKnown RBP17.69■□□□□ 0.42
VIM-205ENST00000485947 PUM1Q14671 1186 aaKnown RBP eCLIP17.69■□□□□ 0.425e-14■□□□□ 11
VIM-205ENST00000485947 CRY1Q16526 586 aa17.69■□□□□ 0.42
VIM-205ENST00000485947 ZNF569Q5MCW4 686 aa17.69■□□□□ 0.42
VIM-205ENST00000485947 PLEKHA7Q6IQ23 1121 aa17.69■□□□□ 0.42
VIM-205ENST00000485947 RASSF3Q86WH2 238 aa17.69■□□□□ 0.42
VIM-205ENST00000485947 TSTD1Q8NFU3 115 aa17.69■□□□□ 0.42
VIM-205ENST00000485947 UBE2Q2Q8WVN8 375 aa17.69■□□□□ 0.42
VIM-205ENST00000485947 PLD4Q96BZ4 506 aa17.69■□□□□ 0.42
VIM-205ENST00000485947 C18orf8Q96DM3 657 aa17.69■□□□□ 0.42
VIM-205ENST00000485947 CPXM1Q96SM3 734 aa17.69■□□□□ 0.42
VIM-205ENST00000485947 BBS2Q9BXC9 721 aa17.69■□□□□ 0.42
VIM-205ENST00000485947 SLC4A5Q9BY07 1137 aa17.69■□□□□ 0.42
VIM-205ENST00000485947 IRX2Q9BZI1 471 aaPredicted RBP17.69■□□□□ 0.42
VIM-205ENST00000485947 ULBP1Q9BZM6 244 aa17.69■□□□□ 0.42
VIM-205ENST00000485947 SYNCQ9H7C4 482 aa17.69■□□□□ 0.42
VIM-205ENST00000485947 PARVAQ9NVD7 372 aa17.69■□□□□ 0.42
VIM-205ENST00000485947 MARCH2Q9P0N8 246 aa17.69■□□□□ 0.42
VIM-205ENST00000485947 LCMT1Q9UIC8 334 aa17.69■□□□□ 0.42
VIM-205ENST00000485947 HBS1LQ9Y450 684 aaKnown RBP17.69■□□□□ 0.42
VIM-205ENST00000485947 TBC1D3BA6NDS4 549 aa17.68■□□□□ 0.42
VIM-205ENST00000485947 SART1O43290 800 aaKnown RBP17.68■□□□□ 0.42
VIM-205ENST00000485947 BUB1O43683 1085 aa17.68■□□□□ 0.42
VIM-205ENST00000485947 FBXO21O94952 628 aa17.68■□□□□ 0.42
VIM-205ENST00000485947 LATS1O95835 1130 aa17.68■□□□□ 0.42
VIM-205ENST00000485947 RRM1P23921 792 aa17.68■□□□□ 0.42
VIM-205ENST00000485947 C2orf27AQ580R0 203 aa17.68■□□□□ 0.42
VIM-205ENST00000485947 GRAMD4Q6IC98 578 aa17.68■□□□□ 0.42
VIM-205ENST00000485947 C12orf40Q86WS4 652 aa17.68■□□□□ 0.42
VIM-205ENST00000485947 MIB1Q86YT6 1006 aa17.68■□□□□ 0.42
VIM-205ENST00000485947 ZDHHC17Q8IUH5 632 aa17.68■□□□□ 0.42
VIM-205ENST00000485947 KIAA2013Q8IYS2 634 aa17.68■□□□□ 0.42
VIM-205ENST00000485947 SYCE1Q8N0S2 351 aa17.68■□□□□ 0.42
VIM-205ENST00000485947 SLC35F6Q8N357 371 aa17.68■□□□□ 0.42
VIM-205ENST00000485947 CPXM2Q8N436 756 aa17.68■□□□□ 0.42
VIM-205ENST00000485947 DCLK2Q8N568 766 aa17.68■□□□□ 0.42
VIM-205ENST00000485947 TERB1Q8NA31 727 aa17.68■□□□□ 0.42
VIM-205ENST00000485947 C3orf20Q8ND61 904 aa17.68■□□□□ 0.42
VIM-205ENST00000485947 ZNF564Q8TBZ8 553 aaPredicted RBP17.68■□□□□ 0.42
VIM-205ENST00000485947 RNF139Q8WU17 664 aa17.68■□□□□ 0.42
VIM-205ENST00000485947 TRIM62Q9BVG3 475 aa17.68■□□□□ 0.42
VIM-205ENST00000485947 NUP85Q9BW27 656 aa17.68■□□□□ 0.42
VIM-205ENST00000485947 POLMQ9NP87 494 aaPredicted RBP17.68■□□□□ 0.42
VIM-205ENST00000485947 DLL3Q9NYJ7 618 aa17.68■□□□□ 0.42
VIM-205ENST00000485947 PCDHGA5Q9Y5G8 931 aa17.68■□□□□ 0.42
VIM-205ENST00000485947 CAPN6Q9Y6Q1 641 aa17.68■□□□□ 0.42
VIM-205ENST00000485947 CHD6Q8TD26 2715 aa17.68■□□□□ 0.42
VIM-205ENST00000485947 TCRBV5S1A1TA0A578 114 aa17.67■□□□□ 0.42
VIM-205ENST00000485947 SCAMP3O14828 347 aaKnown RBP17.67■□□□□ 0.42
VIM-205ENST00000485947 NPC1O15118 1278 aa17.67■□□□□ 0.42
VIM-205ENST00000485947 ATMINO43313 823 aaPredicted RBP17.67■□□□□ 0.42
VIM-205ENST00000485947 CHRM1P11229 460 aaPredicted RBP17.67■□□□□ 0.42
VIM-205ENST00000485947 TYRP14679 529 aa17.67■□□□□ 0.42
VIM-205ENST00000485947 SCNN1AP37088 669 aa17.67■□□□□ 0.42
VIM-205ENST00000485947 ADIGQ0VDE8 80 aa17.67■□□□□ 0.42
VIM-205ENST00000485947 EFEMP1Q12805 493 aa17.67■□□□□ 0.42
VIM-205ENST00000485947 TRIP4Q15650 581 aaPredicted RBP17.67■□□□□ 0.42
VIM-205ENST00000485947 USP39Q53GS9 565 aaKnown RBP17.67■□□□□ 0.42
VIM-205ENST00000485947 DNTTIP2Q5QJE6 756 aaKnown RBP17.67■□□□□ 0.42
VIM-205ENST00000485947 BSPRYQ5W0U4 402 aa17.67■□□□□ 0.42
VIM-205ENST00000485947 DNAJC24Q6P3W2 148 aa17.67■□□□□ 0.42
VIM-205ENST00000485947 SYT10Q6XYQ8 523 aa17.67■□□□□ 0.42
VIM-205ENST00000485947 TMEM110Q86TL2 294 aa17.67■□□□□ 0.42
VIM-205ENST00000485947 XYLT1Q86Y38 959 aa17.67■□□□□ 0.42
VIM-205ENST00000485947 IL17RCQ8NAC3 791 aa17.67■□□□□ 0.42
VIM-205ENST00000485947 TPCN2Q8NHX9 752 aa17.67■□□□□ 0.42
VIM-205ENST00000485947 KIF18AQ8NI77 898 aa17.67■□□□□ 0.42
VIM-205ENST00000485947 WBP2Q969T9 261 aa17.67■□□□□ 0.42
VIM-205ENST00000485947 OSGEPQ9NPF4 335 aa17.67■□□□□ 0.42
VIM-205ENST00000485947 RRAGDQ9NQL2 400 aaPredicted RBP17.67■□□□□ 0.42
VIM-205ENST00000485947 ST7Q9NRC1 585 aa17.67■□□□□ 0.42
VIM-205ENST00000485947 RASAL2Q9UJF2 1139 aa17.67■□□□□ 0.42
VIM-205ENST00000485947 FBXO10Q9UK96 956 aa17.67■□□□□ 0.42
VIM-205ENST00000485947 NEDD8-MDP1E9PL57 170 aa17.66■□□□□ 0.42
VIM-205ENST00000485947 RHOBTB1O94844 696 aa17.66■□□□□ 0.42
VIM-205ENST00000485947 PENKP01210 267 aaPredicted RBP17.66■□□□□ 0.42
VIM-205ENST00000485947 ERBB2P04626 1255 aa17.66■□□□□ 0.42
VIM-205ENST00000485947 CYBBP04839 570 aa17.66■□□□□ 0.42
VIM-205ENST00000485947 TGM1P22735 817 aa17.66■□□□□ 0.42
VIM-205ENST00000485947 CASQ1P31415 396 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms