RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 ZFYVE19Q96K21 471 aa12.65□□□□□ -0.38
SDC1-206ENST00000482879 EPAS1Q99814 870 aa12.65□□□□□ -0.38
SDC1-206ENST00000482879 TRMT61BQ9BVS5 477 aaKnown RBP12.65□□□□□ -0.38
SDC1-206ENST00000482879 KCNK12Q9HB15 430 aa12.65□□□□□ -0.38
SDC1-206ENST00000482879 IGSF9Q9P2J2 1179 aa12.65□□□□□ -0.38
SDC1-206ENST00000482879 PRKAG3Q9UGI9 489 aa12.65□□□□□ -0.38
SDC1-206ENST00000482879 VANGL2Q9ULK5 521 aa12.65□□□□□ -0.38
SDC1-206ENST00000482879 LRRD1A4D1F6 860 aa12.64□□□□□ -0.39
SDC1-206ENST00000482879 LOC730098B7Z3J9 87 aa12.64□□□□□ -0.39
SDC1-206ENST00000482879 E9PAM4 449 aa12.64□□□□□ -0.39
SDC1-206ENST00000482879 PI4K2BG5E9Z4 385 aa12.64□□□□□ -0.39
SDC1-206ENST00000482879 EEF2KO00418 725 aaKnown RBP12.64□□□□□ -0.39
SDC1-206ENST00000482879 ENC1O14682 589 aa12.64□□□□□ -0.39
SDC1-206ENST00000482879 LRIG2O94898 1065 aa12.64□□□□□ -0.39
SDC1-206ENST00000482879 ZRANB2O95218 330 aaKnown RBP eCLIP12.64□□□□□ -0.39
SDC1-206ENST00000482879 KDELR1P24390 212 aa12.64□□□□□ -0.39
SDC1-206ENST00000482879 GDI1P31150 447 aa12.64□□□□□ -0.39
SDC1-206ENST00000482879 PEX5P50542 639 aa12.64□□□□□ -0.39
SDC1-206ENST00000482879 ARSEP51690 589 aa12.64□□□□□ -0.39
SDC1-206ENST00000482879 ETF1P62495 437 aaKnown RBP12.64□□□□□ -0.39
SDC1-206ENST00000482879 FCHO2Q0JRZ9 810 aa12.64□□□□□ -0.39
SDC1-206ENST00000482879 PDK2Q15119 407 aa12.64□□□□□ -0.39
SDC1-206ENST00000482879 PDGFRLQ15198 375 aa12.64□□□□□ -0.39
SDC1-206ENST00000482879 EML3Q32P44 896 aa12.64□□□□□ -0.39
SDC1-206ENST00000482879 TRIM68Q6AZZ1 485 aa12.64□□□□□ -0.39
SDC1-206ENST00000482879 TPGS1Q6ZTW0 290 aa12.64□□□□□ -0.39
SDC1-206ENST00000482879 MAP7D3Q8IWC1 876 aa12.64□□□□□ -0.39
SDC1-206ENST00000482879 KATNAL2Q8IYT4 538 aa12.64□□□□□ -0.39
SDC1-206ENST00000482879 RCOR2Q8IZ40 523 aa12.64□□□□□ -0.39
SDC1-206ENST00000482879 ADGRG2Q8IZP9 1017 aa12.64□□□□□ -0.39
SDC1-206ENST00000482879 ALG3Q92685 438 aa12.64□□□□□ -0.39
SDC1-206ENST00000482879 RNF25Q96BH1 459 aaPredicted RBP12.64□□□□□ -0.39
SDC1-206ENST00000482879 TMA16Q96EY4 203 aaKnown RBP12.64□□□□□ -0.39
SDC1-206ENST00000482879 ASIC4Q96FT7 647 aa12.64□□□□□ -0.39
SDC1-206ENST00000482879 RPRD1AQ96P16 312 aaPredicted RBP12.64□□□□□ -0.39
SDC1-206ENST00000482879 WDR24Q96S15 920 aa12.64□□□□□ -0.39
SDC1-206ENST00000482879 FAM83CQ9BQN1 747 aa12.64□□□□□ -0.39
SDC1-206ENST00000482879 TLR10Q9BXR5 811 aa12.64□□□□□ -0.39
SDC1-206ENST00000482879 PCDH18Q9HCL0 1135 aa12.64□□□□□ -0.39
SDC1-206ENST00000482879 SPTBN5Q9NRC6 3674 aaKnown RBP12.64□□□□□ -0.39
SDC1-206ENST00000482879 MIA3Q5JRA6 1907 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 TICRRQ7Z2Z1 1910 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 DRGXA6NNA5 263 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 H3BRJ5 948 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 CHADO15335 359 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 DAPK3O43293 454 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 CYBBP04839 570 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 ASGR2P07307 311 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 CD48P09326 243 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 ARSAP15289 507 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 GOT1P17174 413 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 ARL4AP40617 200 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 ZNF135P52742 658 aaPredicted RBP12.63□□□□□ -0.39
SDC1-206ENST00000482879 TPI1P60174 286 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 ZP2Q05996 745 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 SEMA3BQ13214 749 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 DPYSL3Q14195 570 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 MPPE1Q53F39 396 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 RABGAP1LQ5R372 815 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 LY6G5CQ5SRR4 150 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 RWDD4Q6NW29 188 aaKnown RBP12.63□□□□□ -0.39
SDC1-206ENST00000482879 RHBDF2Q6PJF5 856 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 NYAP1Q6ZVC0 841 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 TMEM25Q86YD3 366 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 CCDC50Q8IVM0 306 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 ZNF683Q8IZ20 524 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 CFAP52Q8N1V2 620 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 SLC44A3Q8N4M1 653 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 EXD1Q8NHP7 514 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 FAM71BQ8TC56 605 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 DDI1Q8WTU0 396 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 IRF7Q92985 503 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 ATP2A3Q93084 1043 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 IGSF8Q969P0 613 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 TBC1D31Q96DN5 1066 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 MYEOVQ96EZ4 313 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 RBM41Q96IZ5 413 aaKnown RBP12.63□□□□□ -0.39
SDC1-206ENST00000482879 C16orf45Q96MC5 204 aaPredicted RBP12.63□□□□□ -0.39
SDC1-206ENST00000482879 ASB2Q96Q27 587 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 NAPGQ99747 312 aaPredicted RBP12.63□□□□□ -0.39
SDC1-206ENST00000482879 CALN1Q9BXU9 219 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 EBF3Q9H4W6 596 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 BRD9Q9H8M2 597 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 SPHK2Q9NRA0 654 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 CWC15Q9P013 229 aaKnown RBP12.63□□□□□ -0.39
SDC1-206ENST00000482879 STIM2Q9P246 746 aa12.63□□□□□ -0.39
SDC1-206ENST00000482879 XIRP2A4UGR9 3374 aa12.62□□□□□ -0.39
SDC1-206ENST00000482879 TYW5A2RUC4 315 aaKnown RBP12.62□□□□□ -0.39
SDC1-206ENST00000482879 CTAGE9A4FU28 777 aa12.62□□□□□ -0.39
SDC1-206ENST00000482879 C3orf70A6NLC5 250 aaPredicted RBP12.62□□□□□ -0.39
SDC1-206ENST00000482879 GFRA2O00451 464 aa12.62□□□□□ -0.39
SDC1-206ENST00000482879 KCNK3O14649 394 aa12.62□□□□□ -0.39
SDC1-206ENST00000482879 TBL1XO60907 577 aa12.62□□□□□ -0.39
SDC1-206ENST00000482879 NFATC1O95644 943 aa12.62□□□□□ -0.39
SDC1-206ENST00000482879 ATP1A1P05023 1023 aaKnown RBP12.62□□□□□ -0.39
SDC1-206ENST00000482879 BMP1P13497 986 aa12.62□□□□□ -0.39
SDC1-206ENST00000482879 EPHB2P29323 1055 aa12.62□□□□□ -0.39
SDC1-206ENST00000482879 CASQ1P31415 396 aa12.62□□□□□ -0.39
SDC1-206ENST00000482879 HTR7P34969 479 aa12.62□□□□□ -0.39
SDC1-206ENST00000482879 CETN2P41208 172 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms