RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 MCM3P25205 808 aa10.49□□□□□ -0.73
USP39-215ENST00000481409 EPHB2P29323 1055 aa10.49□□□□□ -0.73
USP39-215ENST00000481409 CORO1AP31146 461 aaKnown RBP10.49□□□□□ -0.73
USP39-215ENST00000481409 STIP1P31948 543 aaKnown RBP10.49□□□□□ -0.73
USP39-215ENST00000481409 MAPKAPK2P49137 400 aa10.49□□□□□ -0.73
USP39-215ENST00000481409 CYP4F8P98187 520 aa10.49□□□□□ -0.73
USP39-215ENST00000481409 SIX1Q15475 284 aaPredicted RBP10.49□□□□□ -0.73
USP39-215ENST00000481409 CA9Q16790 459 aa10.49□□□□□ -0.73
USP39-215ENST00000481409 MPP7Q5T2T1 576 aa10.49□□□□□ -0.73
USP39-215ENST00000481409 KAZNQ674X7 775 aa10.49□□□□□ -0.73
USP39-215ENST00000481409 SYCE2Q6PIF2 218 aa10.49□□□□□ -0.73
USP39-215ENST00000481409 TMCO3Q6UWJ1 677 aa10.49□□□□□ -0.73
USP39-215ENST00000481409 Q6ZNB5 142 aa10.49□□□□□ -0.73
USP39-215ENST00000481409 ATL2Q8NHH9 583 aa10.49□□□□□ -0.73
USP39-215ENST00000481409 PCDH19Q8TAB3 1148 aa10.49□□□□□ -0.73
USP39-215ENST00000481409 NKD2Q969F2 451 aaPredicted RBP10.49□□□□□ -0.73
USP39-215ENST00000481409 PRMT1Q99873 361 aaKnown RBP10.49□□□□□ -0.73
USP39-215ENST00000481409 SLC46A2Q9BY10 475 aa10.49□□□□□ -0.73
USP39-215ENST00000481409 ZYG11BQ9C0D3 744 aa10.49□□□□□ -0.73
USP39-215ENST00000481409 TTYH1Q9H313 450 aaPredicted RBP10.49□□□□□ -0.73
USP39-215ENST00000481409 PRDM12Q9H4Q4 367 aa10.49□□□□□ -0.73
USP39-215ENST00000481409 IGFLR1Q9H665 355 aa10.49□□□□□ -0.73
USP39-215ENST00000481409 TRPV4Q9HBA0 871 aa10.49□□□□□ -0.73
USP39-215ENST00000481409 ARHGEF4Q9NR80 690 aa10.49□□□□□ -0.73
USP39-215ENST00000481409 TDP1Q9NUW8 608 aa10.49□□□□□ -0.73
USP39-215ENST00000481409 HCFC1R1Q9NWW0 138 aa10.49□□□□□ -0.73
USP39-215ENST00000481409 CPQQ9Y646 472 aa10.49□□□□□ -0.73
USP39-215ENST00000481409 NUP210Q8TEM1 1887 aaPredicted RBP10.49□□□□□ -0.73
USP39-215ENST00000481409 TNRC18O15417 2968 aaPredicted RBP10.48□□□□□ -0.73
USP39-215ENST00000481409 FAM187AA6NFU0 413 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 I6L893 689 aaPredicted RBP10.48□□□□□ -0.73
USP39-215ENST00000481409 MCF2LO15068 1137 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 DCLK1O15075 740 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 MTSS1O43312 755 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 ITGAVP06756 1048 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 CD48P09326 243 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 KRT10P13645 584 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 GOT1P17174 413 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 ERCC2P18074 760 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 TACR2P21452 398 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 GTF2F1P35269 517 aaKnown RBP eCLIP10.48□□□□□ -0.73
USP39-215ENST00000481409 ETFBP38117 255 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 CCR2P41597 374 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 NDST2P52849 883 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 OXCT1P55809 520 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 YBEYP58557 167 aaPredicted RBP10.48□□□□□ -0.73
USP39-215ENST00000481409 AUHQ13825 339 aaKnown RBP10.48□□□□□ -0.73
USP39-215ENST00000481409 GRIN2CQ14957 1233 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 PDK1Q15118 436 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 NOMO1Q15155 1222 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 TEAD2Q15562 447 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 RARS2Q5T160 578 aaKnown RBP10.48□□□□□ -0.73
USP39-215ENST00000481409 PIK3R6Q5UE93 754 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 TMC5Q6UXY8 1006 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 C4orf22Q6V702 233 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 ZNF783Q6ZMS7 281 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 CHST9Q7L1S5 443 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 ZNF683Q8IZ20 524 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 MICALL1Q8N3F8 863 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 CELF5Q8N6W0 485 aaKnown RBP10.48□□□□□ -0.73
USP39-215ENST00000481409 PQLC3Q8N755 202 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 PLD5Q8N7P1 536 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 RTL3Q8N8U3 475 aaKnown RBP10.48□□□□□ -0.73
USP39-215ENST00000481409 PRELID2Q8N945 189 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 MYRIPQ8NFW9 859 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 UBXN4Q92575 508 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 MAGOHBQ96A72 148 aaKnown RBP10.48□□□□□ -0.73
USP39-215ENST00000481409 HEMGNQ9BXL5 484 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 SIK2Q9H0K1 926 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 S1PR5Q9H228 398 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 ANLNQ9NQW6 1124 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 KLHL11Q9NVR0 708 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 TMEM248Q9NWD8 314 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 GPATCH2LQ9NWQ4 482 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 AGO1Q9UL18 857 aaKnown RBP10.48□□□□□ -0.73
USP39-215ENST00000481409 NOTCH4Q99466 2003 aa10.48□□□□□ -0.73
USP39-215ENST00000481409 CXorf51AA0A1B0GTR3 108 aa10.47□□□□□ -0.73
USP39-215ENST00000481409 TARSL2A2RTX5 802 aaKnown RBP10.47□□□□□ -0.73
USP39-215ENST00000481409 LEFTY2O00292 366 aa10.47□□□□□ -0.73
USP39-215ENST00000481409 PPP1R12AO14974 1030 aaPredicted RBP10.47□□□□□ -0.73
USP39-215ENST00000481409 LIASO43766 372 aa10.47□□□□□ -0.73
USP39-215ENST00000481409 GREM1O60565 184 aa10.47□□□□□ -0.73
USP39-215ENST00000481409 CLDN11O75508 207 aa10.47□□□□□ -0.73
USP39-215ENST00000481409 GAS8O95995 478 aa10.47□□□□□ -0.73
USP39-215ENST00000481409 MOCS2O96007 188 aaPredicted RBP10.47□□□□□ -0.73
USP39-215ENST00000481409 COILP38432 576 aaPredicted RBP10.47□□□□□ -0.73
USP39-215ENST00000481409 KCNQ1P51787 676 aa10.47□□□□□ -0.73
USP39-215ENST00000481409 CDH4P55283 916 aa10.47□□□□□ -0.73
USP39-215ENST00000481409 USP4Q13107 963 aa10.47□□□□□ -0.73
USP39-215ENST00000481409 MMRN1Q13201 1228 aa10.47□□□□□ -0.73
USP39-215ENST00000481409 BYSLQ13895 437 aaKnown RBP10.47□□□□□ -0.73
USP39-215ENST00000481409 SLC5A9Q2M3M2 681 aa10.47□□□□□ -0.73
USP39-215ENST00000481409 NCBP2-AS2Q69YL0 99 aa10.47□□□□□ -0.73
USP39-215ENST00000481409 C8orf74Q6P047 294 aa10.47□□□□□ -0.73
USP39-215ENST00000481409 FBXL22Q6P050 247 aa10.47□□□□□ -0.73
USP39-215ENST00000481409 AADACL2Q6P093 401 aa10.47□□□□□ -0.73
USP39-215ENST00000481409 CCDC137Q6PK04 289 aaKnown RBP10.47□□□□□ -0.73
USP39-215ENST00000481409 SETD3Q86TU7 594 aaPredicted RBP10.47□□□□□ -0.73
USP39-215ENST00000481409 CHSY1Q86X52 802 aa10.47□□□□□ -0.73
USP39-215ENST00000481409 DENND1CQ8IV53 801 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms