RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 RNF19AQ9NV58 838 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 EEF2KO00418 725 aaKnown RBP12.57□□□□□ -0.4
PTPRF-212ENST00000477970 ATP5BP06576 529 aaKnown RBP12.57□□□□□ -0.4
PTPRF-212ENST00000477970 CRHR1P34998 444 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 WASHC5Q12768 1159 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 FAM171BQ6P995 826 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 ZMIZ2Q8NF64 920 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 PPP1R13LQ8WUF5 828 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 KLHL29Q96CT2 875 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 UROC1Q96N76 676 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 RAB3IPQ96QF0 476 aaPredicted RBP12.57□□□□□ -0.4
PTPRF-212ENST00000477970 SRPK1Q96SB4 655 aaKnown RBP12.57□□□□□ -0.4
PTPRF-212ENST00000477970 TUBB6Q9BUF5 446 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 MAGEB5Q9BZ81 275 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 LNPEPQ9UIQ6 1025 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 DSEQ9UL01 958 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 ZNF638Q14966 1978 aaKnown RBP12.57□□□□□ -0.4
PTPRF-212ENST00000477970 MYADML2A6NDP7 307 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 ARL5CA6NH57 179 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 ERI2A8K979 691 aaKnown RBP12.57□□□□□ -0.4
PTPRF-212ENST00000477970 RNF103O00237 685 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 CHRNA1P02708 482 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 MLH1P40692 756 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 MAP3K7CLP57077 242 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 PPIDQ08752 370 aaKnown RBP12.57□□□□□ -0.4
PTPRF-212ENST00000477970 DSC3Q14574 896 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 SYPL2Q5VXT5 272 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 PCED1BQ96HM7 432 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 C7orf26Q96N11 449 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 PKMYT1Q99640 499 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 ACBD6Q9BR61 282 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 TSSK1BQ9BXA7 367 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 ULBP1Q9BZM6 244 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 SIRPGQ9P1W8 387 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 RPL26L1Q9UNX3 145 aaKnown RBP12.57□□□□□ -0.4
PTPRF-212ENST00000477970 TDRD15B5MCY1 1934 aaKnown RBP12.57□□□□□ -0.4
PTPRF-212ENST00000477970 AP1G2O75843 785 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 CSH1P0DML2 217 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 CSH2P0DML3 217 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 ODC1P11926 461 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 ACAT1P24752 427 aaKnown RBP12.57□□□□□ -0.4
PTPRF-212ENST00000477970 CYP2C18P33260 490 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 HTR7P34969 479 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 SERPINB4P48594 390 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 NDUFV1P49821 464 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 ARL13BQ3SXY8 428 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 GDF6Q6KF10 455 aaPredicted RBP12.57□□□□□ -0.4
PTPRF-212ENST00000477970 DENND5BQ6ZUT9 1274 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 VAT1Q99536 393 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 MTO1Q9Y2Z2 717 aaKnown RBP12.57□□□□□ -0.4
PTPRF-212ENST00000477970 MFHAS1Q9Y4C4 1052 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 SQORQ9Y6N5 450 aa12.57□□□□□ -0.4
PTPRF-212ENST00000477970 M0QZQ0 153 aa12.56□□□□□ -0.4
PTPRF-212ENST00000477970 NRP1O14786 923 aa12.56□□□□□ -0.4
PTPRF-212ENST00000477970 LTFP02788 710 aa12.56□□□□□ -0.4
PTPRF-212ENST00000477970 CXCR3P49682 368 aa12.56□□□□□ -0.4
PTPRF-212ENST00000477970 CLCNKBP51801 687 aa12.56□□□□□ -0.4
PTPRF-212ENST00000477970 AGMOQ6ZNB7 445 aa12.56□□□□□ -0.4
PTPRF-212ENST00000477970 MPP5Q8N3R9 675 aa12.56□□□□□ -0.4
PTPRF-212ENST00000477970 HDAC11Q96DB2 347 aa12.56□□□□□ -0.4
PTPRF-212ENST00000477970 TRIM55Q9BYV6 548 aa12.56□□□□□ -0.4
PTPRF-212ENST00000477970 HMX2A2RU54 273 aa12.56□□□□□ -0.4
PTPRF-212ENST00000477970 RASSF2P50749 326 aa12.56□□□□□ -0.4
PTPRF-212ENST00000477970 PITX1P78337 314 aaPredicted RBP12.56□□□□□ -0.4
PTPRF-212ENST00000477970 FAM26DQ5JW98 314 aa12.56□□□□□ -0.4
PTPRF-212ENST00000477970 WLSQ5T9L3 541 aa12.56□□□□□ -0.4
PTPRF-212ENST00000477970 HFE2Q6ZVN8 426 aa12.56□□□□□ -0.4
PTPRF-212ENST00000477970 NLRP9Q7RTR0 991 aa12.56□□□□□ -0.4
PTPRF-212ENST00000477970 CTAGE3PQ8IX95 158 aa12.56□□□□□ -0.4
PTPRF-212ENST00000477970 ARNTL2Q8WYA1 636 aa12.56□□□□□ -0.4
PTPRF-212ENST00000477970 PTPRN2Q92932 1015 aa12.56□□□□□ -0.4
PTPRF-212ENST00000477970 ISL2Q96A47 359 aa12.56□□□□□ -0.4
PTPRF-212ENST00000477970 ERP27Q96DN0 273 aa12.56□□□□□ -0.4
PTPRF-212ENST00000477970 FAM111AQ96PZ2 611 aa12.56□□□□□ -0.4
PTPRF-212ENST00000477970 GAD1Q99259 594 aa12.56□□□□□ -0.4
PTPRF-212ENST00000477970 LGMNQ99538 433 aa12.56□□□□□ -0.4
PTPRF-212ENST00000477970 MIOSQ9NXC5 875 aa12.56□□□□□ -0.4
PTPRF-212ENST00000477970 TRHDEQ9UKU6 1024 aa12.56□□□□□ -0.4
PTPRF-212ENST00000477970 ARHGEF37A1IGU5 675 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 GOLGA8RI6L899 631 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 MAP3K6O95382 1288 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 C6orf222P0C671 652 aaPredicted RBP12.55□□□□□ -0.4
PTPRF-212ENST00000477970 SKIP12755 728 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 CST5P28325 142 aaPredicted RBP12.55□□□□□ -0.4
PTPRF-212ENST00000477970 GALNT2Q10471 571 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 EIF4EBP2Q13542 120 aaPredicted RBP12.55□□□□□ -0.4
PTPRF-212ENST00000477970 SPANXN3Q5MJ09 141 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 MFSD14CQ5VZR4 134 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 DSTYKQ6XUX3 929 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 KYAT3Q6YP21 454 aaKnown RBP12.55□□□□□ -0.4
PTPRF-212ENST00000477970 TBC1D1Q86TI0 1168 aaPredicted RBP12.55□□□□□ -0.4
PTPRF-212ENST00000477970 ZNF567Q8N184 647 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 RNF169Q8NCN4 708 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 CDKL2Q92772 493 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 RTP3Q9BQQ7 232 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 IQCGQ9H095 443 aaKnown RBP12.55□□□□□ -0.4
PTPRF-212ENST00000477970 PRDM12Q9H4Q4 367 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 TLE6Q9H808 572 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 PAK6Q9NQU5 681 aaPredicted RBP12.55□□□□□ -0.4
PTPRF-212ENST00000477970 KANSL3Q9P2N6 904 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms