RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ART1P52961 327 aa3.82□□□□□ -1.8
CCDC88A-212ENST00000474059 EPHB1P54762 984 aa3.82□□□□□ -1.8
CCDC88A-212ENST00000474059 ELF2Q15723 593 aa3.82□□□□□ -1.8
CCDC88A-212ENST00000474059 PARM1Q6UWI2 310 aa3.82□□□□□ -1.8
CCDC88A-212ENST00000474059 SMCR8Q8TEV9 937 aaPredicted RBP3.82□□□□□ -1.8
CCDC88A-212ENST00000474059 ADAMTS14Q8WXS8 1223 aa3.82□□□□□ -1.8
CCDC88A-212ENST00000474059 KAT2BQ92831 832 aa3.82□□□□□ -1.8
CCDC88A-212ENST00000474059 ELOVL1Q9BW60 279 aa3.82□□□□□ -1.8
CCDC88A-212ENST00000474059 DCLK3Q9C098 648 aa3.82□□□□□ -1.8
CCDC88A-212ENST00000474059 ISCUQ9H1K1 167 aa3.82□□□□□ -1.8
CCDC88A-212ENST00000474059 TPCN1Q9ULQ1 816 aa3.82□□□□□ -1.8
CCDC88A-212ENST00000474059 MAGED2Q9UNF1 606 aaPredicted RBP3.82□□□□□ -1.8
CCDC88A-212ENST00000474059 DTX4Q9Y2E6 619 aa3.82□□□□□ -1.8
CCDC88A-212ENST00000474059 PTGDR2Q9Y5Y4 395 aa3.82□□□□□ -1.8
CCDC88A-212ENST00000474059 EID1Q9Y6B2 187 aa3.82□□□□□ -1.8
CCDC88A-212ENST00000474059 RHODO00212 210 aa3.81□□□□□ -1.8
CCDC88A-212ENST00000474059 CTNND1O60716 968 aaKnown RBP3.81□□□□□ -1.8
CCDC88A-212ENST00000474059 RFPL1O75677 317 aa3.81□□□□□ -1.8
CCDC88A-212ENST00000474059 ALADP13716 330 aa3.81□□□□□ -1.8
CCDC88A-212ENST00000474059 DRD1P21728 446 aa3.81□□□□□ -1.8
CCDC88A-212ENST00000474059 ROR2Q01974 943 aaKnown RBP3.81□□□□□ -1.8
CCDC88A-212ENST00000474059 NFE2Q16621 373 aaPredicted RBP3.81□□□□□ -1.8
CCDC88A-212ENST00000474059 IZUMO4Q1ZYL8 232 aa3.81□□□□□ -1.8
CCDC88A-212ENST00000474059 KRT71Q3SY84 523 aa3.81□□□□□ -1.8
CCDC88A-212ENST00000474059 TMEM196Q5HYL7 178 aa3.81□□□□□ -1.8
CCDC88A-212ENST00000474059 Q5PR19 223 aa3.81□□□□□ -1.8
CCDC88A-212ENST00000474059 ACSM6Q6P461 480 aa3.81□□□□□ -1.8
CCDC88A-212ENST00000474059 FMNL3Q8IVF7 1028 aa3.81□□□□□ -1.8
CCDC88A-212ENST00000474059 CLASRPQ8N2M8 674 aaKnown RBP3.81□□□□□ -1.8
CCDC88A-212ENST00000474059 OR52L2PQ8NGH6 319 aa3.81□□□□□ -1.8
CCDC88A-212ENST00000474059 OR52N4Q8NGI2 321 aa3.81□□□□□ -1.8
CCDC88A-212ENST00000474059 CLMNQ96JQ2 1002 aa3.81□□□□□ -1.8
CCDC88A-212ENST00000474059 GPR78Q96P69 363 aa3.81□□□□□ -1.8
CCDC88A-212ENST00000474059 ZNF347Q96SE7 839 aa3.81□□□□□ -1.8
CCDC88A-212ENST00000474059 SEZ6LQ9BYH1 1024 aa3.81□□□□□ -1.8
CCDC88A-212ENST00000474059 MAGEH1Q9H213 219 aa3.81□□□□□ -1.8
CCDC88A-212ENST00000474059 CHPF2Q9P2E5 772 aa3.81□□□□□ -1.8
CCDC88A-212ENST00000474059 LDB3O75112 727 aa3.8□□□□□ -1.8
CCDC88A-212ENST00000474059 INMTO95050 263 aa3.8□□□□□ -1.8
CCDC88A-212ENST00000474059 KAT7O95251 611 aa3.8□□□□□ -1.8
CCDC88A-212ENST00000474059 CGAP01215 116 aa3.8□□□□□ -1.8
CCDC88A-212ENST00000474059 MYF5P13349 255 aa3.8□□□□□ -1.8
CCDC88A-212ENST00000474059 RASSF2P50749 326 aa3.8□□□□□ -1.8
CCDC88A-212ENST00000474059 DLX5P56178 289 aa3.8□□□□□ -1.8
CCDC88A-212ENST00000474059 COASYQ13057 564 aa3.8□□□□□ -1.8
CCDC88A-212ENST00000474059 MRGPRG-AS1Q2M3A8 158 aa3.8□□□□□ -1.8
CCDC88A-212ENST00000474059 ANXA2RQ3ZCQ2 193 aa3.8□□□□□ -1.8
CCDC88A-212ENST00000474059 HMBOX1Q6NT76 420 aa3.8□□□□□ -1.8
CCDC88A-212ENST00000474059 MEX3BQ6ZN04 569 aaKnown RBP3.8□□□□□ -1.8
CCDC88A-212ENST00000474059 TAF15Q92804 592 aaKnown RBP eCLIP3.8□□□□□ -1.8
CCDC88A-212ENST00000474059 APIPQ96GX9 242 aa3.8□□□□□ -1.8
CCDC88A-212ENST00000474059 ZCWPW1Q9H0M4 648 aa3.8□□□□□ -1.8
CCDC88A-212ENST00000474059 ERVK-5Q9HDB9 667 aa3.8□□□□□ -1.8
CCDC88A-212ENST00000474059 TCEAL9Q9UHQ7 104 aa3.8□□□□□ -1.8
CCDC88A-212ENST00000474059 B3GNT3Q9Y2A9 372 aa3.8□□□□□ -1.8
CCDC88A-212ENST00000474059 TTC34A8MYJ7 566 aa3.79□□□□□ -1.8
CCDC88A-212ENST00000474059 BTBD18B2RXH4 712 aa3.79□□□□□ -1.8
CCDC88A-212ENST00000474059 I6L893 689 aaPredicted RBP3.79□□□□□ -1.8
CCDC88A-212ENST00000474059 SPRY3O43610 288 aa3.79□□□□□ -1.8
CCDC88A-212ENST00000474059 PPP6R2O75170 966 aa3.79□□□□□ -1.8
CCDC88A-212ENST00000474059 CPA1P15085 419 aa3.79□□□□□ -1.8
CCDC88A-212ENST00000474059 ATICP31939 592 aa3.79□□□□□ -1.8
CCDC88A-212ENST00000474059 OTUD3Q5T2D3 398 aaPredicted RBP3.79□□□□□ -1.8
CCDC88A-212ENST00000474059 C16orf89Q6UX73 402 aa3.79□□□□□ -1.8
CCDC88A-212ENST00000474059 PIK3AP1Q6ZUJ8 805 aa3.79□□□□□ -1.8
CCDC88A-212ENST00000474059 ENGASEQ8NFI3 743 aa3.79□□□□□ -1.8
CCDC88A-212ENST00000474059 GLMPQ8WWB7 406 aa3.79□□□□□ -1.8
CCDC88A-212ENST00000474059 CENPIQ92674 756 aaPredicted RBP3.79□□□□□ -1.8
CCDC88A-212ENST00000474059 TSR2Q969E8 191 aaKnown RBP3.79□□□□□ -1.8
CCDC88A-212ENST00000474059 SNX22Q96L94 193 aa3.79□□□□□ -1.8
CCDC88A-212ENST00000474059 HTATIP2Q9BUP3 242 aa3.79□□□□□ -1.8
CCDC88A-212ENST00000474059 TM6SF1Q9BZW5 370 aa3.79□□□□□ -1.8
CCDC88A-212ENST00000474059 SPRY4Q9C004 299 aa3.79□□□□□ -1.8
CCDC88A-212ENST00000474059 TASP1Q9H6P5 420 aa3.79□□□□□ -1.8
CCDC88A-212ENST00000474059 TBC1D23Q9NUY8 699 aa3.79□□□□□ -1.8
CCDC88A-212ENST00000474059 HIF1ANQ9NWT6 349 aa3.79□□□□□ -1.8
CCDC88A-212ENST00000474059 ZIM2Q9NZV7 527 aa3.79□□□□□ -1.8
CCDC88A-212ENST00000474059 ZNF212Q9UDV6 495 aa3.79□□□□□ -1.8
CCDC88A-212ENST00000474059 E2F8A0AVK6 867 aa3.78□□□□□ -1.8
CCDC88A-212ENST00000474059 FOXO6A8MYZ6 492 aa3.78□□□□□ -1.8
CCDC88A-212ENST00000474059 KLKB1P03952 638 aa3.78□□□□□ -1.8
CCDC88A-212ENST00000474059 ZNF12P17014 697 aa3.78□□□□□ -1.8
CCDC88A-212ENST00000474059 SLC8A1P32418 973 aa3.78□□□□□ -1.8
CCDC88A-212ENST00000474059 CLCN5P51795 746 aa3.78□□□□□ -1.8
CCDC88A-212ENST00000474059 BFSP2Q13515 415 aa3.78□□□□□ -1.8
CCDC88A-212ENST00000474059 PPP2R5AQ15172 486 aa3.78□□□□□ -1.8
CCDC88A-212ENST00000474059 Q6ZTK2 550 aa3.78□□□□□ -1.8
CCDC88A-212ENST00000474059 KDELC2Q7Z4H8 507 aa3.78□□□□□ -1.8
CCDC88A-212ENST00000474059 MUC20Q8N307 709 aaPredicted RBP3.78□□□□□ -1.8
CCDC88A-212ENST00000474059 PAQR4Q8N4S7 273 aaPredicted RBP3.78□□□□□ -1.8
CCDC88A-212ENST00000474059 LRTOMTQ8WZ04 291 aa3.78□□□□□ -1.8
CCDC88A-212ENST00000474059 OGDHLQ9ULD0 1010 aa3.78□□□□□ -1.8
CCDC88A-212ENST00000474059 OR6C75A6NL08 312 aa3.77□□□□□ -1.81
CCDC88A-212ENST00000474059 DHHO43323 396 aa3.77□□□□□ -1.81
CCDC88A-212ENST00000474059 TSPAN6O43657 245 aa3.77□□□□□ -1.81
CCDC88A-212ENST00000474059 ZBTB11O95625 1053 aaPredicted RBP3.77□□□□□ -1.81
CCDC88A-212ENST00000474059 SCGB1D2O95969 90 aa3.77□□□□□ -1.81
CCDC88A-212ENST00000474059 MST1P26927 711 aa3.77□□□□□ -1.81
CCDC88A-212ENST00000474059 POLE2P56282 527 aa3.77□□□□□ -1.81
CCDC88A-212ENST00000474059 SELENOVP59797 346 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms