RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 ZNF18P17022 549 aa18.59■□□□□ 0.57
UPF3A-203ENST00000474056 TACR2P21452 398 aa18.59■□□□□ 0.57
UPF3A-203ENST00000474056 ATXN1P54253 815 aaKnown RBP18.59■□□□□ 0.57
UPF3A-203ENST00000474056 JAM2P57087 298 aa18.59■□□□□ 0.57
UPF3A-203ENST00000474056 ARID5AQ03989 594 aa18.59■□□□□ 0.57
UPF3A-203ENST00000474056 BYSLQ13895 437 aaKnown RBP18.59■□□□□ 0.57
UPF3A-203ENST00000474056 AASDHQ4L235 1098 aaPredicted RBP18.59■□□□□ 0.57
UPF3A-203ENST00000474056 RAP1GAP2Q684P5 730 aa18.59■□□□□ 0.57
UPF3A-203ENST00000474056 ARMCX6Q7L4S7 300 aa18.59■□□□□ 0.57
UPF3A-203ENST00000474056 DGLUCYQ7Z3D6 616 aa18.59■□□□□ 0.57
UPF3A-203ENST00000474056 CYP2U1Q7Z449 544 aa18.59■□□□□ 0.57
UPF3A-203ENST00000474056 CHSY1Q86X52 802 aa18.59■□□□□ 0.57
UPF3A-203ENST00000474056 LGI2Q8N0V4 545 aa18.59■□□□□ 0.57
UPF3A-203ENST00000474056 AHI1Q8N157 1196 aa18.59■□□□□ 0.57
UPF3A-203ENST00000474056 AOPEPQ8N6M6 819 aa18.59■□□□□ 0.57
UPF3A-203ENST00000474056 ATP6V0D2Q8N8Y2 350 aa18.59■□□□□ 0.57
UPF3A-203ENST00000474056 C12orf50Q8NA57 414 aaPredicted RBP18.59■□□□□ 0.57
UPF3A-203ENST00000474056 ZNF397Q8NF99 534 aaPredicted RBP18.59■□□□□ 0.57
UPF3A-203ENST00000474056 NETO1Q8TDF5 533 aa18.59■□□□□ 0.57
UPF3A-203ENST00000474056 BTN2A3PQ96KV6 586 aa18.59■□□□□ 0.57
UPF3A-203ENST00000474056 MRGPRX1Q96LB2 322 aa18.59■□□□□ 0.57
UPF3A-203ENST00000474056 VPS45Q9NRW7 570 aa18.59■□□□□ 0.57
UPF3A-203ENST00000474056 CYP8B1Q9UNU6 501 aa18.59■□□□□ 0.57
UPF3A-203ENST00000474056 CACNA1AO00555 2505 aa18.59■□□□□ 0.57
UPF3A-203ENST00000474056 DOCK4Q8N1I0 1966 aa18.59■□□□□ 0.57
UPF3A-203ENST00000474056 IGHV1OR15-9A0A0B4J2B8 117 aa18.58■□□□□ 0.56
UPF3A-203ENST00000474056 LGALS16A8MUM7 142 aa18.58■□□□□ 0.56
UPF3A-203ENST00000474056 MAP3K13O43283 966 aa18.58■□□□□ 0.56
UPF3A-203ENST00000474056 TIMM44O43615 452 aa18.58■□□□□ 0.56
UPF3A-203ENST00000474056 GFPT2O94808 682 aa18.58■□□□□ 0.56
UPF3A-203ENST00000474056 CAVIN2O95810 425 aa18.58■□□□□ 0.56
UPF3A-203ENST00000474056 EPHX1P07099 455 aa18.58■□□□□ 0.56
UPF3A-203ENST00000474056 GABRB2P47870 512 aa18.58■□□□□ 0.56
UPF3A-203ENST00000474056 SNX16P57768 344 aa18.58■□□□□ 0.56
UPF3A-203ENST00000474056 LMAN2Q12907 356 aa18.58■□□□□ 0.56
UPF3A-203ENST00000474056 SYCP1Q15431 976 aa18.58■□□□□ 0.56
UPF3A-203ENST00000474056 PTPRNQ16849 979 aa18.58■□□□□ 0.56
UPF3A-203ENST00000474056 C2CD6Q53TS8 623 aa18.58■□□□□ 0.56
UPF3A-203ENST00000474056 OTUD1Q5VV17 481 aaPredicted RBP18.58■□□□□ 0.56
UPF3A-203ENST00000474056 MBLAC2Q68D91 279 aa18.58■□□□□ 0.56
UPF3A-203ENST00000474056 KIAA1324Q6UXG2 1013 aaKnown RBP18.58■□□□□ 0.56
UPF3A-203ENST00000474056 SERPINA13PQ6UXR4 307 aa18.58■□□□□ 0.56
UPF3A-203ENST00000474056 LPCAT2Q7L5N7 544 aa18.58■□□□□ 0.56
UPF3A-203ENST00000474056 APTXQ7Z2E3 356 aaKnown RBP18.58■□□□□ 0.56
UPF3A-203ENST00000474056 CFAP52Q8N1V2 620 aa18.58■□□□□ 0.56
UPF3A-203ENST00000474056 CARNMT1Q8N4J0 409 aa18.58■□□□□ 0.56
UPF3A-203ENST00000474056 ANKRD20A12PQ8NF67 263 aa18.58■□□□□ 0.56
UPF3A-203ENST00000474056 FIBINQ8TAL6 211 aa18.58■□□□□ 0.56
UPF3A-203ENST00000474056 SLC20A1Q8WUM9 679 aa18.58■□□□□ 0.56
UPF3A-203ENST00000474056 LMLNQ96KR4 655 aa18.58■□□□□ 0.56
UPF3A-203ENST00000474056 ADAM33Q9BZ11 813 aa18.58■□□□□ 0.56
UPF3A-203ENST00000474056 MKRN2Q9H000 416 aaKnown RBP18.58■□□□□ 0.56
UPF3A-203ENST00000474056 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.58■□□□□ 0.56
UPF3A-203ENST00000474056 KCNU1A8MYU2 1149 aa18.57■□□□□ 0.56
UPF3A-203ENST00000474056 FOXD2O60548 495 aaPredicted RBP18.57■□□□□ 0.56
UPF3A-203ENST00000474056 ZNF217O75362 1048 aa18.57■□□□□ 0.56
UPF3A-203ENST00000474056 CDK11BP21127 795 aaKnown RBP18.57■□□□□ 0.56
UPF3A-203ENST00000474056 SDHBP21912 280 aa18.57■□□□□ 0.56
UPF3A-203ENST00000474056 NOS2P35228 1153 aa18.57■□□□□ 0.56
UPF3A-203ENST00000474056 SOX5P35711 763 aa18.57■□□□□ 0.56
UPF3A-203ENST00000474056 PTGER3P43115 390 aa18.57■□□□□ 0.56
UPF3A-203ENST00000474056 COPAP53621 1224 aa18.57■□□□□ 0.56
UPF3A-203ENST00000474056 NOMO3P69849 1222 aa18.57■□□□□ 0.56
UPF3A-203ENST00000474056 ANO6Q4KMQ2 910 aa18.57■□□□□ 0.56
UPF3A-203ENST00000474056 FNDC3BQ53EP0 1204 aaKnown RBP18.57■□□□□ 0.56
UPF3A-203ENST00000474056 CAVIN1Q6NZI2 390 aaKnown RBP18.57■□□□□ 0.56
UPF3A-203ENST00000474056 ERMP1Q7Z2K6 904 aa18.57■□□□□ 0.56
UPF3A-203ENST00000474056 XYLT1Q86Y38 959 aa18.57■□□□□ 0.56
UPF3A-203ENST00000474056 ZDHHC17Q8IUH5 632 aa18.57■□□□□ 0.56
UPF3A-203ENST00000474056 ZNF366Q8N895 744 aa18.57■□□□□ 0.56
UPF3A-203ENST00000474056 ZNF557Q8N988 423 aaPredicted RBP18.57■□□□□ 0.56
UPF3A-203ENST00000474056 PRMT1Q99873 361 aaKnown RBP18.57■□□□□ 0.56
UPF3A-203ENST00000474056 RTKNQ9BST9 563 aa18.57■□□□□ 0.56
UPF3A-203ENST00000474056 NOCTQ9UK39 431 aaKnown RBP18.57■□□□□ 0.56
UPF3A-203ENST00000474056 INTS6Q9UL03 887 aaKnown RBP18.57■□□□□ 0.56
UPF3A-203ENST00000474056 CNOT1A5YKK6 2376 aaKnown RBP18.57■□□□□ 0.56
UPF3A-203ENST00000474056 ATXN2Q99700 1313 aaKnown RBP18.56■□□□□ 0.56
UPF3A-203ENST00000474056 LRRC10BA6NIK2 292 aa18.56■□□□□ 0.56
UPF3A-203ENST00000474056 PATE3B3GLJ2 98 aa18.56■□□□□ 0.56
UPF3A-203ENST00000474056 SLC30A4O14863 429 aa18.56■□□□□ 0.56
UPF3A-203ENST00000474056 SYNCRIPO60506 623 aaKnown RBP18.56■□□□□ 0.56
UPF3A-203ENST00000474056 LUC7L3O95232 432 aaKnown RBP18.56■□□□□ 0.56
UPF3A-203ENST00000474056 LSM8O95777 96 aaKnown RBP18.56■□□□□ 0.56
UPF3A-203ENST00000474056 ATP1A3P13637 1013 aa18.56■□□□□ 0.56
UPF3A-203ENST00000474056 POLR2EP19388 210 aaKnown RBP18.56■□□□□ 0.56
UPF3A-203ENST00000474056 TFE3P19532 575 aaPredicted RBP18.56■□□□□ 0.56
UPF3A-203ENST00000474056 ABCB4P21439 1286 aa18.56■□□□□ 0.56
UPF3A-203ENST00000474056 CCR1P32246 355 aa18.56■□□□□ 0.56
UPF3A-203ENST00000474056 RNASE9P60153 205 aaKnown RBP18.56■□□□□ 0.56
UPF3A-203ENST00000474056 FMO1Q01740 532 aa18.56■□□□□ 0.56
UPF3A-203ENST00000474056 RPL6Q02878 288 aaKnown RBP18.56■□□□□ 0.56
UPF3A-203ENST00000474056 UBXN1Q04323 297 aa18.56■□□□□ 0.56
UPF3A-203ENST00000474056 NME3Q13232 169 aa18.56■□□□□ 0.56
UPF3A-203ENST00000474056 CDH18Q13634 790 aa18.56■□□□□ 0.56
UPF3A-203ENST00000474056 E2F5Q15329 346 aa18.56■□□□□ 0.56
UPF3A-203ENST00000474056 FSCBQ5H9T9 825 aa18.56■□□□□ 0.56
UPF3A-203ENST00000474056 FAM102AQ5T9C2 384 aaPredicted RBP18.56■□□□□ 0.56
UPF3A-203ENST00000474056 NAA35Q5VZE5 725 aa18.56■□□□□ 0.56
UPF3A-203ENST00000474056 SLC36A4Q6YBV0 504 aa18.56■□□□□ 0.56
UPF3A-203ENST00000474056 MMS22LQ6ZRQ5 1243 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms