RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 WASF3Q9UPY6 502 aa17.22■□□□□ 0.35
CCDC28B-204ENST00000469003 TLR6Q9Y2C9 796 aa17.22■□□□□ 0.35
CCDC28B-204ENST00000469003 LETM1O95202 739 aaPredicted RBP17.21■□□□□ 0.35
CCDC28B-204ENST00000469003 ATP5BP06576 529 aaKnown RBP17.21■□□□□ 0.35
CCDC28B-204ENST00000469003 DLDP09622 509 aaKnown RBP17.21■□□□□ 0.35
CCDC28B-204ENST00000469003 CD70P32970 193 aa17.21■□□□□ 0.35
CCDC28B-204ENST00000469003 PTPRNQ16849 979 aa17.21■□□□□ 0.35
CCDC28B-204ENST00000469003 CACUL1Q86Y37 369 aa17.21■□□□□ 0.35
CCDC28B-204ENST00000469003 HJURPQ8NCD3 748 aaPredicted RBP17.21■□□□□ 0.35
CCDC28B-204ENST00000469003 ZNF606Q8WXB4 792 aa17.21■□□□□ 0.35
CCDC28B-204ENST00000469003 SLC39A13Q96H72 371 aa17.21■□□□□ 0.35
CCDC28B-204ENST00000469003 FAM81BQ96LP2 452 aa17.21■□□□□ 0.35
CCDC28B-204ENST00000469003 TRIM62Q9BVG3 475 aa17.21■□□□□ 0.35
CCDC28B-204ENST00000469003 LHX5Q9H2C1 402 aa17.21■□□□□ 0.35
CCDC28B-204ENST00000469003 FBRSQ9HAH7 460 aa17.21■□□□□ 0.35
CCDC28B-204ENST00000469003 NAALADL1Q9UQQ1 740 aa17.21■□□□□ 0.35
CCDC28B-204ENST00000469003 PCNX2A6NKB5 2137 aa17.2■□□□□ 0.34
CCDC28B-204ENST00000469003 ASPMQ8IZT6 3477 aa17.2■□□□□ 0.34
CCDC28B-204ENST00000469003 A0A1B0GTW7 788 aa17.2■□□□□ 0.34
CCDC28B-204ENST00000469003 TYW5A2RUC4 315 aaKnown RBP17.2■□□□□ 0.34
CCDC28B-204ENST00000469003 METTL12A8MUP2 240 aa17.2■□□□□ 0.34
CCDC28B-204ENST00000469003 POLR2EP19388 210 aaKnown RBP17.2■□□□□ 0.34
CCDC28B-204ENST00000469003 GNA15P30679 374 aa17.2■□□□□ 0.34
CCDC28B-204ENST00000469003 UBE2HP62256 183 aa17.2■□□□□ 0.34
CCDC28B-204ENST00000469003 ACAP1Q15027 740 aa17.2■□□□□ 0.34
CCDC28B-204ENST00000469003 DCAF12L1Q5VU92 463 aa17.2■□□□□ 0.34
CCDC28B-204ENST00000469003 TRIM65Q6PJ69 517 aa17.2■□□□□ 0.34
CCDC28B-204ENST00000469003 TAC4Q86UU9 113 aa17.2■□□□□ 0.34
CCDC28B-204ENST00000469003 MFN1Q8IWA4 741 aa17.2■□□□□ 0.34
CCDC28B-204ENST00000469003 ZNF366Q8N895 744 aa17.2■□□□□ 0.34
CCDC28B-204ENST00000469003 OR2I1PQ8NGU4 316 aa17.2■□□□□ 0.34
CCDC28B-204ENST00000469003 FIBINQ8TAL6 211 aa17.2■□□□□ 0.34
CCDC28B-204ENST00000469003 LMLNQ96KR4 655 aa17.2■□□□□ 0.34
CCDC28B-204ENST00000469003 PRICKLE1Q96MT3 831 aaPredicted RBP17.2■□□□□ 0.34
CCDC28B-204ENST00000469003 CRACR2AQ9BSW2 395 aa17.2■□□□□ 0.34
CCDC28B-204ENST00000469003 ZDHHC5Q9C0B5 715 aa17.2■□□□□ 0.34
CCDC28B-204ENST00000469003 PCED1AQ9H1Q7 454 aa17.2■□□□□ 0.34
CCDC28B-204ENST00000469003 STIM2Q9P246 746 aa17.2■□□□□ 0.34
CCDC28B-204ENST00000469003 CACNA1EQ15878 2313 aa17.2■□□□□ 0.34
CCDC28B-204ENST00000469003 E5RJQ4 531 aa17.19■□□□□ 0.34
CCDC28B-204ENST00000469003 CAPN9O14815 690 aa17.19■□□□□ 0.34
CCDC28B-204ENST00000469003 PAPSS1O43252 624 aaPredicted RBP17.19■□□□□ 0.34
CCDC28B-204ENST00000469003 THAP12O43422 761 aa17.19■□□□□ 0.34
CCDC28B-204ENST00000469003 GJB3O75712 270 aa17.19■□□□□ 0.34
CCDC28B-204ENST00000469003 CD59P13987 128 aa17.19■□□□□ 0.34
CCDC28B-204ENST00000469003 GRIK2Q13002 908 aa17.19■□□□□ 0.34
CCDC28B-204ENST00000469003 SLC14A1Q13336 389 aa17.19■□□□□ 0.34
CCDC28B-204ENST00000469003 CAMK4Q16566 473 aa17.19■□□□□ 0.34
CCDC28B-204ENST00000469003 MS4A13Q5J8X5 152 aa17.19■□□□□ 0.34
CCDC28B-204ENST00000469003 SYPL2Q5VXT5 272 aa17.19■□□□□ 0.34
CCDC28B-204ENST00000469003 UNQ6494/PRO21346Q6UXR6 183 aa17.19■□□□□ 0.34
CCDC28B-204ENST00000469003 TMEM110Q86TL2 294 aa17.19■□□□□ 0.34
CCDC28B-204ENST00000469003 ZCCHC9Q8N567 271 aaKnown RBP17.19■□□□□ 0.34
CCDC28B-204ENST00000469003 ADAM32Q8TC27 787 aa17.19■□□□□ 0.34
CCDC28B-204ENST00000469003 TTC17Q96AE7 1141 aa17.19■□□□□ 0.34
CCDC28B-204ENST00000469003 MED15Q96RN5 788 aa17.19■□□□□ 0.34
CCDC28B-204ENST00000469003 NUCKS1Q9H1E3 243 aaKnown RBP17.19■□□□□ 0.34
CCDC28B-204ENST00000469003 POPDC2Q9HBU9 364 aa17.19■□□□□ 0.34
CCDC28B-204ENST00000469003 PRSS16Q9NQE7 514 aa17.19■□□□□ 0.34
CCDC28B-204ENST00000469003 SUN2Q9UH99 717 aa17.19■□□□□ 0.34
CCDC28B-204ENST00000469003 CYTH4Q9UIA0 394 aa17.19■□□□□ 0.34
CCDC28B-204ENST00000469003 ZMIZ1Q9ULJ6 1067 aa17.19■□□□□ 0.34
CCDC28B-204ENST00000469003 SPEGQ15772 3267 aa17.18■□□□□ 0.34
CCDC28B-204ENST00000469003 BECN2A8MW95 431 aa17.18■□□□□ 0.34
CCDC28B-204ENST00000469003 C1QTNF9BB2RNN3 333 aa17.18■□□□□ 0.34
CCDC28B-204ENST00000469003 MOCS2O96007 188 aaPredicted RBP17.18■□□□□ 0.34
CCDC28B-204ENST00000469003 C1QTNF9P0C862 333 aa17.18■□□□□ 0.34
CCDC28B-204ENST00000469003 HOXB3P14651 431 aaPredicted RBP17.18■□□□□ 0.34
CCDC28B-204ENST00000469003 SLC9A1P19634 815 aa17.18■□□□□ 0.34
CCDC28B-204ENST00000469003 RPS14P62263 151 aaKnown RBP17.18■□□□□ 0.34
CCDC28B-204ENST00000469003 RPS24P62847 133 aaKnown RBP17.18■□□□□ 0.34
CCDC28B-204ENST00000469003 ZBTB16Q05516 673 aa17.18■□□□□ 0.34
CCDC28B-204ENST00000469003 HNRNPDQ14103 355 aaKnown RBP17.18■□□□□ 0.34
CCDC28B-204ENST00000469003 GJB7Q6PEY0 223 aa17.18■□□□□ 0.34
CCDC28B-204ENST00000469003 GBP6Q6ZN66 633 aa17.18■□□□□ 0.34
CCDC28B-204ENST00000469003 FAM124AQ86V42 546 aa17.18■□□□□ 0.34
CCDC28B-204ENST00000469003 CREBRFQ8IUR6 639 aa17.18■□□□□ 0.34
CCDC28B-204ENST00000469003 MYEOVQ96EZ4 313 aa17.18■□□□□ 0.34
CCDC28B-204ENST00000469003 MIR1-1HGQ9H1L0 117 aa17.18■□□□□ 0.34
CCDC28B-204ENST00000469003 THAP9Q9H5L6 903 aa17.18■□□□□ 0.34
CCDC28B-204ENST00000469003 ACP6Q9NPH0 428 aa17.18■□□□□ 0.34
CCDC28B-204ENST00000469003 APEX2Q9UBZ4 518 aa17.18■□□□□ 0.34
CCDC28B-204ENST00000469003 SPAARA0A1B0GVQ0 90 aa17.17■□□□□ 0.34
CCDC28B-204ENST00000469003 GTPBP10A4D1E9 387 aaKnown RBP17.17■□□□□ 0.34
CCDC28B-204ENST00000469003 BCAT2O15382 392 aaPredicted RBP17.17■□□□□ 0.34
CCDC28B-204ENST00000469003 TRUB2O95900 331 aaKnown RBP17.17■□□□□ 0.34
CCDC28B-204ENST00000469003 TOP3BO95985 862 aaKnown RBP17.17■□□□□ 0.34
CCDC28B-204ENST00000469003 IGLV3-25P01717 112 aa17.17■□□□□ 0.34
CCDC28B-204ENST00000469003 APOEP02649 317 aa17.17■□□□□ 0.34
CCDC28B-204ENST00000469003 ASLP04424 464 aa17.17■□□□□ 0.34
CCDC28B-204ENST00000469003 SPINK2P20155 84 aa17.17■□□□□ 0.34
CCDC28B-204ENST00000469003 CSKP41240 450 aa17.17■□□□□ 0.34
CCDC28B-204ENST00000469003 YWHAZP63104 245 aaKnown RBP17.17■□□□□ 0.34
CCDC28B-204ENST00000469003 SIM1P81133 766 aaPredicted RBP17.17■□□□□ 0.34
CCDC28B-204ENST00000469003 PDCLQ13371 301 aa17.17■□□□□ 0.34
CCDC28B-204ENST00000469003 CDH18Q13634 790 aa17.17■□□□□ 0.34
CCDC28B-204ENST00000469003 ARHGAP44Q17R89 818 aa17.17■□□□□ 0.34
CCDC28B-204ENST00000469003 EXOC3L4Q17RC7 722 aa17.17■□□□□ 0.34
CCDC28B-204ENST00000469003 SMYD5Q6GMV2 418 aa17.17■□□□□ 0.34
CCDC28B-204ENST00000469003 IRF2BP1Q8IU81 584 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms