RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 ZNF397Q8NF99 534 aaPredicted RBP12.49□□□□□ -0.41
USP40-210ENST00000454354 FIBINQ8TAL6 211 aa12.49□□□□□ -0.41
USP40-210ENST00000454354 PIGKQ92643 395 aa12.49□□□□□ -0.41
USP40-210ENST00000454354 MYEOVQ96EZ4 313 aa12.49□□□□□ -0.41
USP40-210ENST00000454354 BTN2A3PQ96KV6 586 aa12.49□□□□□ -0.41
USP40-210ENST00000454354 MKRN2Q9H000 416 aaKnown RBP12.49□□□□□ -0.41
USP40-210ENST00000454354 NUCKS1Q9H1E3 243 aaKnown RBP12.49□□□□□ -0.41
USP40-210ENST00000454354 PRDM16Q9HAZ2 1276 aa12.49□□□□□ -0.41
USP40-210ENST00000454354 CD93Q9NPY3 652 aa12.49□□□□□ -0.41
USP40-210ENST00000454354 PLCB1Q9NQ66 1216 aa12.49□□□□□ -0.41
USP40-210ENST00000454354 PILRBQ9UKJ0 227 aa12.49□□□□□ -0.41
USP40-210ENST00000454354 CYP8B1Q9UNU6 501 aa12.49□□□□□ -0.41
USP40-210ENST00000454354 PCNX2A6NKB5 2137 aa12.48□□□□□ -0.41
USP40-210ENST00000454354 PATE3B3GLJ2 98 aa12.48□□□□□ -0.41
USP40-210ENST00000454354 GOLGA6L22H0YM25 854 aa12.48□□□□□ -0.41
USP40-210ENST00000454354 SYNCRIPO60506 623 aaKnown RBP12.48□□□□□ -0.41
USP40-210ENST00000454354 DAB1O75553 588 aa12.48□□□□□ -0.41
USP40-210ENST00000454354 MOCS2O96007 188 aaPredicted RBP12.48□□□□□ -0.41
USP40-210ENST00000454354 ERBB2P04626 1255 aa12.48□□□□□ -0.41
USP40-210ENST00000454354 EPHX1P07099 455 aa12.48□□□□□ -0.41
USP40-210ENST00000454354 DLDP09622 509 aaKnown RBP12.48□□□□□ -0.41
USP40-210ENST00000454354 RPS24P62847 133 aaKnown RBP12.48□□□□□ -0.41
USP40-210ENST00000454354 ARID5AQ03989 594 aa12.48□□□□□ -0.41
USP40-210ENST00000454354 ZNF33AQ06730 810 aa12.48□□□□□ -0.41
USP40-210ENST00000454354 CAMK2GQ13555 558 aaPredicted RBP12.48□□□□□ -0.41
USP40-210ENST00000454354 RAPGEF1Q13905 1077 aa12.48□□□□□ -0.41
USP40-210ENST00000454354 DCAF6Q58WW2 860 aa12.48□□□□□ -0.41
USP40-210ENST00000454354 ZC3H12AQ5D1E8 599 aaKnown RBP12.48□□□□□ -0.41
USP40-210ENST00000454354 MBLAC2Q68D91 279 aa12.48□□□□□ -0.41
USP40-210ENST00000454354 SLC23A3Q6PIS1 610 aa12.48□□□□□ -0.41
USP40-210ENST00000454354 KIAA1324Q6UXG2 1013 aaKnown RBP12.48□□□□□ -0.41
USP40-210ENST00000454354 SERPINA13PQ6UXR4 307 aa12.48□□□□□ -0.41
USP40-210ENST00000454354 C11orf57Q6ZUT1 292 aaPredicted RBP12.48□□□□□ -0.41
USP40-210ENST00000454354 RABEPKQ7Z6M1 372 aa12.48□□□□□ -0.41
USP40-210ENST00000454354 ZDHHC17Q8IUH5 632 aa12.48□□□□□ -0.41
USP40-210ENST00000454354 SLC41A1Q8IVJ1 513 aa12.48□□□□□ -0.41
USP40-210ENST00000454354 DEFB106AQ8N104 65 aa12.48□□□□□ -0.41
USP40-210ENST00000454354 TTC17Q96AE7 1141 aa12.48□□□□□ -0.41
USP40-210ENST00000454354 ERLEC1Q96DZ1 483 aa12.48□□□□□ -0.41
USP40-210ENST00000454354 LSM14BQ9BX40 385 aaKnown RBP12.48□□□□□ -0.41
USP40-210ENST00000454354 GANQ9H2C0 597 aa12.48□□□□□ -0.41
USP40-210ENST00000454354 FBRSQ9HAH7 460 aa12.48□□□□□ -0.41
USP40-210ENST00000454354 ITM2CQ9NQX7 267 aa12.48□□□□□ -0.41
USP40-210ENST00000454354 TMEM74BQ9NUR3 256 aa12.48□□□□□ -0.41
USP40-210ENST00000454354 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.48□□□□□ -0.41
USP40-210ENST00000454354 TAB2Q9NYJ8 693 aa12.48□□□□□ -0.41
USP40-210ENST00000454354 XPO7Q9UIA9 1087 aaKnown RBP12.48□□□□□ -0.41
USP40-210ENST00000454354 CEP83Q9Y592 693 aa12.48□□□□□ -0.41
USP40-210ENST00000454354 CHD5Q8TDI0 1954 aa12.48□□□□□ -0.41
USP40-210ENST00000454354 EPG5Q9HCE0 2579 aa12.47□□□□□ -0.41
USP40-210ENST00000454354 ATXN2Q99700 1313 aaKnown RBP12.47□□□□□ -0.41
USP40-210ENST00000454354 KCNU1A8MYU2 1149 aa12.47□□□□□ -0.41
USP40-210ENST00000454354 F8VZ95 297 aa12.47□□□□□ -0.41
USP40-210ENST00000454354 PES1O00541 588 aaKnown RBP12.47□□□□□ -0.41
USP40-210ENST00000454354 LUC7L3O95232 432 aaKnown RBP12.47□□□□□ -0.41
USP40-210ENST00000454354 MBD3O95983 291 aa12.47□□□□□ -0.41
USP40-210ENST00000454354 ATP5BP06576 529 aaKnown RBP12.47□□□□□ -0.41
USP40-210ENST00000454354 SLC2A3P11169 496 aa12.47□□□□□ -0.41
USP40-210ENST00000454354 CYP11B1P15538 503 aa12.47□□□□□ -0.41
USP40-210ENST00000454354 POLR2EP19388 210 aaKnown RBP12.47□□□□□ -0.41
USP40-210ENST00000454354 TACR2P21452 398 aa12.47□□□□□ -0.41
USP40-210ENST00000454354 ITPKAP23677 461 aa12.47□□□□□ -0.41
USP40-210ENST00000454354 CD6P30203 668 aa12.47□□□□□ -0.41
USP40-210ENST00000454354 SCNN1AP37088 669 aa12.47□□□□□ -0.41
USP40-210ENST00000454354 GABRB2P47870 512 aa12.47□□□□□ -0.41
USP40-210ENST00000454354 CDK17Q00537 523 aa12.47□□□□□ -0.41
USP40-210ENST00000454354 SLC6A3Q01959 620 aa12.47□□□□□ -0.41
USP40-210ENST00000454354 LMAN2Q12907 356 aa12.47□□□□□ -0.41
USP40-210ENST00000454354 KRT31Q15323 416 aa12.47□□□□□ -0.41
USP40-210ENST00000454354 FNDC3BQ53EP0 1204 aaKnown RBP12.47□□□□□ -0.41
USP40-210ENST00000454354 TRIM61Q5EBN2 209 aa12.47□□□□□ -0.41
USP40-210ENST00000454354 PPM1JQ5JR12 505 aa12.47□□□□□ -0.41
USP40-210ENST00000454354 OR6B2Q6IFH4 312 aa12.47□□□□□ -0.41
USP40-210ENST00000454354 TMPRSS6Q8IU80 811 aa12.47□□□□□ -0.41
USP40-210ENST00000454354 ATP6V0D2Q8N8Y2 350 aa12.47□□□□□ -0.41
USP40-210ENST00000454354 TMEM35BQ8NCS4 154 aa12.47□□□□□ -0.41
USP40-210ENST00000454354 OR2T3Q8NH03 318 aa12.47□□□□□ -0.41
USP40-210ENST00000454354 CEP76Q8TAP6 659 aa12.47□□□□□ -0.41
USP40-210ENST00000454354 CYB5D2Q8WUJ1 264 aa12.47□□□□□ -0.41
USP40-210ENST00000454354 SIPA1Q96FS4 1042 aa12.47□□□□□ -0.41
USP40-210ENST00000454354 MYO19Q96H55 970 aa12.47□□□□□ -0.41
USP40-210ENST00000454354 ZNF419Q96HQ0 510 aaPredicted RBP12.47□□□□□ -0.41
USP40-210ENST00000454354 PRMT1Q99873 361 aaKnown RBP12.47□□□□□ -0.41
USP40-210ENST00000454354 STK33Q9BYT3 514 aa12.47□□□□□ -0.41
USP40-210ENST00000454354 FAM204AQ9H8W3 233 aa12.47□□□□□ -0.41
USP40-210ENST00000454354 WSB2Q9NYS7 404 aaPredicted RBP12.47□□□□□ -0.41
USP40-210ENST00000454354 INTS6Q9UL03 887 aaKnown RBP12.47□□□□□ -0.41
USP40-210ENST00000454354 PLA2G4CQ9UP65 541 aa12.47□□□□□ -0.41
USP40-210ENST00000454354 DAAM1Q9Y4D1 1078 aa12.47□□□□□ -0.41
USP40-210ENST00000454354 PLXNA2O75051 1894 aa12.46□□□□□ -0.41
USP40-210ENST00000454354 TMEM131Q92545 1883 aa12.46□□□□□ -0.41
USP40-210ENST00000454354 CDX4O14627 284 aaPredicted RBP12.46□□□□□ -0.41
USP40-210ENST00000454354 GRAP2O75791 330 aa12.46□□□□□ -0.41
USP40-210ENST00000454354 LSM8O95777 96 aaKnown RBP12.46□□□□□ -0.41
USP40-210ENST00000454354 ASLP04424 464 aa12.46□□□□□ -0.41
USP40-210ENST00000454354 ADRB1P08588 477 aa12.46□□□□□ -0.41
USP40-210ENST00000454354 HLA-EP13747 358 aa12.46□□□□□ -0.41
USP40-210ENST00000454354 OXTRP30559 389 aa12.46□□□□□ -0.41
USP40-210ENST00000454354 CCR1P32246 355 aa12.46□□□□□ -0.41
USP40-210ENST00000454354 NOS2P35228 1153 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms