RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 DDX23Q9BUQ8 820 aaKnown RBP4.52□□□□□ -1.69
USP40-209ENST00000452724 ELAC1Q9H777 363 aaKnown RBP4.52□□□□□ -1.69
USP40-209ENST00000452724 LIN7CQ9NUP9 197 aaKnown RBP4.52□□□□□ -1.69
USP40-209ENST00000452724 SRP68Q9UHB9 627 aaKnown RBP4.52□□□□□ -1.69
USP40-209ENST00000452724 RAB21Q9UL25 225 aa4.52□□□□□ -1.69
USP40-209ENST00000452724 TRPC5Q9UL62 973 aaPredicted RBP4.52□□□□□ -1.69
USP40-209ENST00000452724 TBC1D3DA0A087WVF3 549 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 TBC1D3IA0A087WXS9 549 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 TBC1D3EA0A087X179 549 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 CYP2D7A0A087X1C5 515 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 TBC1D3KA0A087X1G2 549 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 SMIM35A0A1B0GVV1 85 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 TBC1D3BA6NDS4 549 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 TBC1D3FA6NER0 549 aaPredicted RBP4.51□□□□□ -1.69
USP40-209ENST00000452724 C16orf96A6NNT2 1141 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 KCNU1A8MYU2 1149 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 TBC1D3LB9A6J9 549 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 PPEF2O14830 753 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 CYP3A4P08684 503 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 TBC1D3HP0C7X1 549 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 PEPDP12955 493 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 SFPQP23246 707 aaKnown RBP eCLIP4.51□□□□□ -1.69
USP40-209ENST00000452724 CST5P28325 142 aaPredicted RBP4.51□□□□□ -1.69
USP40-209ENST00000452724 GRK5P34947 590 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 STAT6P42226 847 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 TAS2R50P59544 299 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 RBM6P78332 1123 aaKnown RBP4.51□□□□□ -1.69
USP40-209ENST00000452724 RNASELQ05823 741 aaKnown RBP4.51□□□□□ -1.69
USP40-209ENST00000452724 ZNF268Q14587 947 aaPredicted RBP4.51□□□□□ -1.69
USP40-209ENST00000452724 TBRG1Q3YBR2 411 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 GALNTL6Q49A17 601 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 TBC1D3GQ6DHY5 549 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 TBC1D3CQ6IPX1 549 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 SLC2A7Q6PXP3 512 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 RINLQ6ZS11 566 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 RRAGAQ7L523 313 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 SMC5Q8IY18 1101 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 TBC1D3Q8IZP1 549 aaPredicted RBP4.51□□□□□ -1.69
USP40-209ENST00000452724 C9orf106Q8NAJ2 232 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 SRFBP1Q8NEF9 429 aaKnown RBP4.51□□□□□ -1.69
USP40-209ENST00000452724 PRSS3P2Q8NHM4 247 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 OSR1Q8TAX0 266 aaPredicted RBP4.51□□□□□ -1.69
USP40-209ENST00000452724 ASB12Q8WXK4 309 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 CPT1BQ92523 772 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 ZNF845Q96IR2 970 aaPredicted RBP4.51□□□□□ -1.69
USP40-209ENST00000452724 TRAPPC9Q96Q05 1148 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 FAM118BQ9BPY3 351 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 SENP7Q9BQF6 1050 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 SAYSD1Q9NPB0 183 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 NDUFAF4Q9P032 175 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 SLC12A4Q9UP95 1085 aa4.51□□□□□ -1.69
USP40-209ENST00000452724 ARID4BQ4LE39 1312 aaPredicted RBP4.5□□□□□ -1.69
USP40-209ENST00000452724 WDR17Q8IZU2 1322 aa4.5□□□□□ -1.69
USP40-209ENST00000452724 MBD3L5A6NJ08 208 aaPredicted RBP4.5□□□□□ -1.69
USP40-209ENST00000452724 C3orf70A6NLC5 250 aaPredicted RBP4.5□□□□□ -1.69
USP40-209ENST00000452724 H0Y3Z8 333 aa4.5□□□□□ -1.69
USP40-209ENST00000452724 RRHO14718 337 aa4.5□□□□□ -1.69
USP40-209ENST00000452724 KAT7O95251 611 aa4.5□□□□□ -1.69
USP40-209ENST00000452724 ALDOAP04075 364 aaKnown RBP4.5□□□□□ -1.69
USP40-209ENST00000452724 DHRS4L1P0CG22 281 aa4.5□□□□□ -1.69
USP40-209ENST00000452724 TACR3P29371 465 aa4.5□□□□□ -1.69
USP40-209ENST00000452724 SERPINA4P29622 427 aa4.5□□□□□ -1.69
USP40-209ENST00000452724 ARHGAP25P42331 645 aa4.5□□□□□ -1.69
USP40-209ENST00000452724 ZNF84P51523 738 aa4.5□□□□□ -1.69
USP40-209ENST00000452724 PRKAA2P54646 552 aa4.5□□□□□ -1.69
USP40-209ENST00000452724 FOXL2P58012 376 aa4.5□□□□□ -1.69
USP40-209ENST00000452724 TRIP6Q15654 476 aaKnown RBP4.5□□□□□ -1.69
USP40-209ENST00000452724 GLE1Q53GS7 698 aaKnown RBP4.5□□□□□ -1.69
USP40-209ENST00000452724 INO80DQ53TQ3 878 aaPredicted RBP4.5□□□□□ -1.69
USP40-209ENST00000452724 RFX8Q6ZV50 586 aa4.5□□□□□ -1.69
USP40-209ENST00000452724 TFAP2DQ7Z6R9 452 aa4.5□□□□□ -1.69
USP40-209ENST00000452724 EXOC8Q8IYI6 725 aa4.5□□□□□ -1.69
USP40-209ENST00000452724 CELF1Q92879 486 aaKnown RBP4.5□□□□□ -1.69
USP40-209ENST00000452724 TBC1D20Q96BZ9 403 aa4.5□□□□□ -1.69
USP40-209ENST00000452724 ZBTB9Q96C00 473 aa4.5□□□□□ -1.69
USP40-209ENST00000452724 HMCESQ96FZ2 354 aa4.5□□□□□ -1.69
USP40-209ENST00000452724 ZNF48Q96MX3 618 aaPredicted RBP4.5□□□□□ -1.69
USP40-209ENST00000452724 TMEM79Q9BSE2 394 aa4.5□□□□□ -1.69
USP40-209ENST00000452724 FAM167BQ9BTA0 163 aa4.5□□□□□ -1.69
USP40-209ENST00000452724 TRIM2Q9C040 744 aa4.5□□□□□ -1.69
USP40-209ENST00000452724 TAF1DQ9H5J8 278 aaPredicted RBP4.5□□□□□ -1.69
USP40-209ENST00000452724 PRDM16Q9HAZ2 1276 aa4.5□□□□□ -1.69
USP40-209ENST00000452724 PDGFCQ9NRA1 345 aa4.5□□□□□ -1.69
USP40-209ENST00000452724 LZTS1Q9Y250 596 aa4.5□□□□□ -1.69
USP40-209ENST00000452724 B3GNT3Q9Y2A9 372 aa4.5□□□□□ -1.69
USP40-209ENST00000452724 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.49□□□□□ -1.69
USP40-209ENST00000452724 TOP3BO95985 862 aaKnown RBP4.49□□□□□ -1.69
USP40-209ENST00000452724 IGFBP2P18065 325 aa4.49□□□□□ -1.69
USP40-209ENST00000452724 IDUAP35475 653 aa4.49□□□□□ -1.69
USP40-209ENST00000452724 SLC37A1P57057 533 aa4.49□□□□□ -1.69
USP40-209ENST00000452724 YPEL5P62699 121 aa4.49□□□□□ -1.69
USP40-209ENST00000452724 DMWDQ09019 674 aa4.49□□□□□ -1.69
USP40-209ENST00000452724 LAMB3Q13751 1172 aa4.49□□□□□ -1.69
USP40-209ENST00000452724 FAM110CQ1W6H9 321 aa4.49□□□□□ -1.69
USP40-209ENST00000452724 GORABQ5T7V8 394 aa4.49□□□□□ -1.69
USP40-209ENST00000452724 DGAT2L7PQ6IED9 249 aa4.49□□□□□ -1.69
USP40-209ENST00000452724 SLC39A5Q6ZMH5 540 aa4.49□□□□□ -1.69
USP40-209ENST00000452724 LDHAL6AQ6ZMR3 332 aa4.49□□□□□ -1.69
USP40-209ENST00000452724 RFX6Q8HWS3 928 aa4.49□□□□□ -1.69
USP40-209ENST00000452724 ADPRHL1Q8NDY3 354 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms