RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 RETREG1Q9H6L5 497 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 SLC24A3Q9HC58 644 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 SPHK2Q9NRA0 654 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 TMPRSS4Q9NRS4 437 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 MARK1Q9P0L2 795 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 PPARGC1AQ9UBK2 798 aaKnown RBP11.97□□□□□ -0.49
SCN9A-204ENST00000452182 OR12D3Q9UGF7 316 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 AP4E1Q9UPM8 1137 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.97□□□□□ -0.49
SCN9A-204ENST00000452182 MYO10Q9HD67 2058 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 COL4A2P08572 1712 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 TCF20Q9UGU0 1960 aaKnown RBP11.97□□□□□ -0.49
SCN9A-204ENST00000452182 IGLV3-10A0A075B6K4 115 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 CCDC66A2RUB6 948 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 MIF4GDA9UHW6 222 aaKnown RBP11.97□□□□□ -0.49
SCN9A-204ENST00000452182 F5H5T6 163 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 SCAMP3O14828 347 aaKnown RBP11.97□□□□□ -0.49
SCN9A-204ENST00000452182 ASGR2P07307 311 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 CTNNA2P26232 953 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 CTNNA1P35221 906 aaKnown RBP11.97□□□□□ -0.49
SCN9A-204ENST00000452182 SSR1P43307 286 aaKnown RBP11.97□□□□□ -0.49
SCN9A-204ENST00000452182 RUNX3Q13761 415 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 MPPE1Q53F39 396 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 KCNT1Q5JUK3 1230 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 ARTNQ5T4W7 220 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 TTC39BQ5VTQ0 682 aaPredicted RBP11.97□□□□□ -0.49
SCN9A-204ENST00000452182 RAP1GAP2Q684P5 730 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 RNF43Q68DV7 783 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 TXNRD3NBQ6F5E7 133 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 FBXL22Q6P050 247 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 RHBDF2Q6PJF5 856 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 PEX26Q7Z412 305 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 CHSY1Q86X52 802 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 VSIG1Q86XK7 387 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 DNASE1L2Q92874 299 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 ZFYVE19Q96K21 471 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 SIK2Q9H0K1 926 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 BRD9Q9H8M2 597 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 ZWILCHQ9H900 591 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 HPS4Q9NQG7 708 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 SLC2A4RGQ9NR83 387 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 DDX56Q9NY93 547 aaKnown RBP11.97□□□□□ -0.49
SCN9A-204ENST00000452182 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.97□□□□□ -0.49
SCN9A-204ENST00000452182 METRNQ9UJH8 293 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 AMFRQ9UKV5 643 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 HYOU1Q9Y4L1 999 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 PCDHA3Q9Y5H8 950 aa11.97□□□□□ -0.49
SCN9A-204ENST00000452182 DOCK4Q8N1I0 1966 aa11.96□□□□□ -0.5
SCN9A-204ENST00000452182 GOLGA6L7A0A1B0GV03 622 aa11.96□□□□□ -0.5
SCN9A-204ENST00000452182 DRGXA6NNA5 263 aa11.96□□□□□ -0.5
SCN9A-204ENST00000452182 E9PAM4 449 aa11.96□□□□□ -0.5
SCN9A-204ENST00000452182 KIF5CO60282 957 aa11.96□□□□□ -0.5
SCN9A-204ENST00000452182 ADH1CP00326 375 aa11.96□□□□□ -0.5
SCN9A-204ENST00000452182 PENKP01210 267 aaPredicted RBP11.96□□□□□ -0.5
SCN9A-204ENST00000452182 CYBBP04839 570 aa11.96□□□□□ -0.5
SCN9A-204ENST00000452182 SRFP11831 508 aa11.96□□□□□ -0.5
SCN9A-204ENST00000452182 MSNP26038 577 aaKnown RBP11.96□□□□□ -0.5
SCN9A-204ENST00000452182 HOXC13P31276 330 aa11.96□□□□□ -0.5
SCN9A-204ENST00000452182 HCAR3P49019 387 aa11.96□□□□□ -0.5
SCN9A-204ENST00000452182 ARSEP51690 589 aa11.96□□□□□ -0.5
SCN9A-204ENST00000452182 PFKPQ01813 784 aa11.96□□□□□ -0.5
SCN9A-204ENST00000452182 NR1H3Q13133 447 aa11.96□□□□□ -0.5
SCN9A-204ENST00000452182 PDK2Q15119 407 aa11.96□□□□□ -0.5
SCN9A-204ENST00000452182 DHCR24Q15392 516 aa11.96□□□□□ -0.5
SCN9A-204ENST00000452182 CA9Q16790 459 aa11.96□□□□□ -0.5
SCN9A-204ENST00000452182 SMTNL2Q2TAL5 461 aa11.96□□□□□ -0.5
SCN9A-204ENST00000452182 RABGAP1LQ5R372 815 aa11.96□□□□□ -0.5
SCN9A-204ENST00000452182 FYB2Q5VWT5 728 aa11.96□□□□□ -0.5
SCN9A-204ENST00000452182 TRIM68Q6AZZ1 485 aa11.96□□□□□ -0.5
SCN9A-204ENST00000452182 LRRC31Q6UY01 552 aa11.96□□□□□ -0.5
SCN9A-204ENST00000452182 KATNAL2Q8IYT4 538 aa11.96□□□□□ -0.5
SCN9A-204ENST00000452182 CPA6Q8N4T0 437 aa11.96□□□□□ -0.5
SCN9A-204ENST00000452182 HJURPQ8NCD3 748 aaPredicted RBP11.96□□□□□ -0.5
SCN9A-204ENST00000452182 TMA16Q96EY4 203 aaKnown RBP11.96□□□□□ -0.5
SCN9A-204ENST00000452182 HES6Q96HZ4 224 aa11.96□□□□□ -0.5
SCN9A-204ENST00000452182 PRICKLE1Q96MT3 831 aaPredicted RBP11.96□□□□□ -0.5
SCN9A-204ENST00000452182 EPAS1Q99814 870 aa11.96□□□□□ -0.5
SCN9A-204ENST00000452182 EBF3Q9H4W6 596 aa11.96□□□□□ -0.5
SCN9A-204ENST00000452182 DHX35Q9H5Z1 703 aaKnown RBP11.96□□□□□ -0.5
SCN9A-204ENST00000452182 ECT2Q9H8V3 914 aa11.96□□□□□ -0.5
SCN9A-204ENST00000452182 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.96□□□□□ -0.5
SCN9A-204ENST00000452182 RCOR3Q9P2K3 495 aaPredicted RBP11.96□□□□□ -0.5
SCN9A-204ENST00000452182 SORCS3Q9UPU3 1222 aa11.96□□□□□ -0.5
SCN9A-204ENST00000452182 TICRRQ7Z2Z1 1910 aa11.95□□□□□ -0.5
SCN9A-204ENST00000452182 COL4A3Q01955 1670 aa11.95□□□□□ -0.5
SCN9A-204ENST00000452182 TYW5A2RUC4 315 aaKnown RBP11.95□□□□□ -0.5
SCN9A-204ENST00000452182 ZNF487B1APH4 448 aa11.95□□□□□ -0.5
SCN9A-204ENST00000452182 FAM72CH0Y354 149 aa11.95□□□□□ -0.5
SCN9A-204ENST00000452182 HOXC11O43248 304 aaPredicted RBP11.95□□□□□ -0.5
SCN9A-204ENST00000452182 LRIG2O94898 1065 aa11.95□□□□□ -0.5
SCN9A-204ENST00000452182 FTCDO95954 541 aa11.95□□□□□ -0.5
SCN9A-204ENST00000452182 CYP17A1P05093 508 aa11.95□□□□□ -0.5
SCN9A-204ENST00000452182 ARSAP15289 507 aa11.95□□□□□ -0.5
SCN9A-204ENST00000452182 PEX5P50542 639 aa11.95□□□□□ -0.5
SCN9A-204ENST00000452182 GAD2Q05329 585 aa11.95□□□□□ -0.5
SCN9A-204ENST00000452182 ITPRIPL2Q3MIP1 535 aa11.95□□□□□ -0.5
SCN9A-204ENST00000452182 LY6G5CQ5SRR4 150 aa11.95□□□□□ -0.5
SCN9A-204ENST00000452182 MEI1Q5TIA1 1274 aa11.95□□□□□ -0.5
SCN9A-204ENST00000452182 FAM72AQ5TYM5 149 aa11.95□□□□□ -0.5
SCN9A-204ENST00000452182 FAM72DQ6L9T8 149 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms