RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 FAM131BQ86XD5 332 aa19.31■□□□□ 0.68
SHH-204ENST00000441114 MFN1Q8IWA4 741 aa19.31■□□□□ 0.68
SHH-204ENST00000441114 CCDC117Q8IWD4 279 aaPredicted RBP19.31■□□□□ 0.68
SHH-204ENST00000441114 IL17RCQ8NAC3 791 aa19.31■□□□□ 0.68
SHH-204ENST00000441114 WFDC5Q8TCV5 224 aa19.31■□□□□ 0.68
SHH-204ENST00000441114 ERLEC1Q96DZ1 483 aa19.31■□□□□ 0.68
SHH-204ENST00000441114 PGAP3Q96FM1 320 aaPredicted RBP19.31■□□□□ 0.68
SHH-204ENST00000441114 MCEEQ96PE7 176 aa19.31■□□□□ 0.68
SHH-204ENST00000441114 HHIPQ96QV1 700 aa19.31■□□□□ 0.68
SHH-204ENST00000441114 ANLNQ9NQW6 1124 aa19.31■□□□□ 0.68
SHH-204ENST00000441114 ABCB8Q9NUT2 735 aa19.31■□□□□ 0.68
SHH-204ENST00000441114 MYO1AQ9UBC5 1043 aa19.31■□□□□ 0.68
SHH-204ENST00000441114 SLC27A6Q9Y2P4 619 aa19.31■□□□□ 0.68
SHH-204ENST00000441114 SNX10Q9Y5X0 201 aa19.31■□□□□ 0.68
SHH-204ENST00000441114 HS3ST4Q9Y661 456 aa19.31■□□□□ 0.68
SHH-204ENST00000441114 K7ESF4 209 aa19.3■□□□□ 0.68
SHH-204ENST00000441114 SGK1O00141 431 aa19.3■□□□□ 0.68
SHH-204ENST00000441114 GZMAP12544 262 aa19.3■□□□□ 0.68
SHH-204ENST00000441114 FNTBP49356 437 aa19.3■□□□□ 0.68
SHH-204ENST00000441114 ADKP55263 362 aaKnown RBP19.3■□□□□ 0.68
SHH-204ENST00000441114 RPL7AP62424 266 aaKnown RBP19.3■□□□□ 0.68
SHH-204ENST00000441114 ZNF528Q3MIS6 628 aa19.3■□□□□ 0.68
SHH-204ENST00000441114 ANKS1BQ7Z6G8 1248 aa19.3■□□□□ 0.68
SHH-204ENST00000441114 CIR1Q86X95 450 aaPredicted RBP19.3■□□□□ 0.68
SHH-204ENST00000441114 OR8K1Q8NGG5 319 aa19.3■□□□□ 0.68
SHH-204ENST00000441114 ZNF653Q96CK0 615 aa19.3■□□□□ 0.68
SHH-204ENST00000441114 FAM122AQ96E09 287 aa19.3■□□□□ 0.68
SHH-204ENST00000441114 VCPIP1Q96JH7 1222 aa19.3■□□□□ 0.68
SHH-204ENST00000441114 ACOX2Q99424 681 aa19.3■□□□□ 0.68
SHH-204ENST00000441114 PRMT1Q99873 361 aaKnown RBP19.3■□□□□ 0.68
SHH-204ENST00000441114 IRX2Q9BZI1 471 aaPredicted RBP19.3■□□□□ 0.68
SHH-204ENST00000441114 CIPCQ9C0C6 399 aa19.3■□□□□ 0.68
SHH-204ENST00000441114 ARHGEF38Q9NXL2 777 aa19.3■□□□□ 0.68
SHH-204ENST00000441114 ARHGAP20Q9P2F6 1191 aa19.3■□□□□ 0.68
SHH-204ENST00000441114 CNOT8Q9UFF9 292 aaKnown RBP19.3■□□□□ 0.68
SHH-204ENST00000441114 HCN2Q9UL51 889 aa19.3■□□□□ 0.68
SHH-204ENST00000441114 VANGL2Q9ULK5 521 aa19.3■□□□□ 0.68
SHH-204ENST00000441114 MMP17Q9ULZ9 603 aa19.3■□□□□ 0.68
SHH-204ENST00000441114 PAXBP1Q9Y5B6 917 aa19.3■□□□□ 0.68
SHH-204ENST00000441114 WDFY4Q6ZS81 3184 aa19.3■□□□□ 0.68
SHH-204ENST00000441114 TCRBV5S1A1TA0A578 114 aa19.29■□□□□ 0.68
SHH-204ENST00000441114 H0Y626 953 aa19.29■□□□□ 0.68
SHH-204ENST00000441114 TDGF1P13385 188 aa19.29■□□□□ 0.68
SHH-204ENST00000441114 HLA-FP30511 346 aa19.29■□□□□ 0.68
SHH-204ENST00000441114 NRLP54845 237 aa19.29■□□□□ 0.68
SHH-204ENST00000441114 AUHQ13825 339 aaKnown RBP19.29■□□□□ 0.68
SHH-204ENST00000441114 TSR1Q2NL82 804 aaKnown RBP19.29■□□□□ 0.68
SHH-204ENST00000441114 EOGTQ5NDL2 527 aa19.29■□□□□ 0.68
SHH-204ENST00000441114 RABGAP1LQ5R372 815 aa19.29■□□□□ 0.68
SHH-204ENST00000441114 MPP7Q5T2T1 576 aa19.29■□□□□ 0.68
SHH-204ENST00000441114 FBXL22Q6P050 247 aa19.29■□□□□ 0.68
SHH-204ENST00000441114 CHST9Q7L1S5 443 aa19.29■□□□□ 0.68
SHH-204ENST00000441114 C14orf80Q86SX3 495 aa19.29■□□□□ 0.68
SHH-204ENST00000441114 FAM172AQ8WUF8 416 aa19.29■□□□□ 0.68
SHH-204ENST00000441114 ATRIPQ8WXE1 791 aa19.29■□□□□ 0.68
SHH-204ENST00000441114 IGSF8Q969P0 613 aa19.29■□□□□ 0.68
SHH-204ENST00000441114 RPRD1AQ96P16 312 aaPredicted RBP19.29■□□□□ 0.68
SHH-204ENST00000441114 ZSCAN32Q9NX65 697 aa19.29■□□□□ 0.68
SHH-204ENST00000441114 GGA2Q9UJY4 613 aa19.29■□□□□ 0.68
SHH-204ENST00000441114 STARD13Q9Y3M8 1113 aa19.29■□□□□ 0.68
SHH-204ENST00000441114 A0A087X0T9 212 aa19.28■□□□□ 0.68
SHH-204ENST00000441114 I6L893 689 aaPredicted RBP19.28■□□□□ 0.68
SHH-204ENST00000441114 CCP110O43303 1012 aa19.28■□□□□ 0.68
SHH-204ENST00000441114 LUC7L3O95232 432 aaKnown RBP19.28■□□□□ 0.68
SHH-204ENST00000441114 PAPSS2O95340 614 aaPredicted RBP19.28■□□□□ 0.68
SHH-204ENST00000441114 FAM228BP0C875 321 aa19.28■□□□□ 0.68
SHH-204ENST00000441114 CHRM1P11229 460 aaPredicted RBP19.28■□□□□ 0.68
SHH-204ENST00000441114 PABPC1P11940 636 aaKnown RBP19.28■□□□□ 0.68
SHH-204ENST00000441114 CD70P32970 193 aa19.28■□□□□ 0.68
SHH-204ENST00000441114 EIF4A3P38919 411 aaKnown RBP19.28■□□□□ 0.68
SHH-204ENST00000441114 PTPN9P43378 593 aa19.28■□□□□ 0.68
SHH-204ENST00000441114 MTA1Q13330 715 aa19.28■□□□□ 0.68
SHH-204ENST00000441114 CDH18Q13634 790 aa19.28■□□□□ 0.68
SHH-204ENST00000441114 PPP1R15BQ5SWA1 713 aa19.28■□□□□ 0.68
SHH-204ENST00000441114 SDE2Q6IQ49 451 aa19.28■□□□□ 0.68
SHH-204ENST00000441114 BNIPLQ7Z465 357 aa19.28■□□□□ 0.68
SHH-204ENST00000441114 TRMT11Q7Z4G4 463 aaKnown RBP19.28■□□□□ 0.68
SHH-204ENST00000441114 CHPFQ8IZ52 775 aa19.28■□□□□ 0.68
SHH-204ENST00000441114 UCMAQ8WVF2 138 aa19.28■□□□□ 0.68
SHH-204ENST00000441114 SORCS1Q8WY21 1168 aa19.28■□□□□ 0.68
SHH-204ENST00000441114 PARVAQ9NVD7 372 aa19.28■□□□□ 0.68
SHH-204ENST00000441114 ZNHIT6Q9NWK9 470 aaKnown RBP19.28■□□□□ 0.68
SHH-204ENST00000441114 ELOVL2Q9NXB9 296 aa19.28■□□□□ 0.68
SHH-204ENST00000441114 CACNA2D2Q9NY47 1150 aa19.28■□□□□ 0.68
SHH-204ENST00000441114 FANCMQ8IYD8 2048 aa19.28■□□□□ 0.68
SHH-204ENST00000441114 ADAM23O75077 832 aa19.27■□□□□ 0.68
SHH-204ENST00000441114 MFAP3LO75121 409 aa19.27■□□□□ 0.68
SHH-204ENST00000441114 ENDOD1O94919 500 aa19.27■□□□□ 0.68
SHH-204ENST00000441114 NTSR1P30989 418 aa19.27■□□□□ 0.68
SHH-204ENST00000441114 NUMBP49757 651 aa19.27■□□□□ 0.68
SHH-204ENST00000441114 IRAK1P51617 712 aa19.27■□□□□ 0.68
SHH-204ENST00000441114 LMAN2Q12907 356 aa19.27■□□□□ 0.68
SHH-204ENST00000441114 MAMLD1Q13495 774 aa19.27■□□□□ 0.68
SHH-204ENST00000441114 CRY1Q16526 586 aa19.27■□□□□ 0.68
SHH-204ENST00000441114 HSF5Q4G112 596 aaPredicted RBP19.27■□□□□ 0.68
SHH-204ENST00000441114 FSCBQ5H9T9 825 aa19.27■□□□□ 0.68
SHH-204ENST00000441114 CCDC122Q5T0U0 273 aa19.27■□□□□ 0.68
SHH-204ENST00000441114 TMEM215Q68D42 235 aa19.27■□□□□ 0.68
SHH-204ENST00000441114 SCYL2Q6P3W7 929 aa19.27■□□□□ 0.68
SHH-204ENST00000441114 ZC3H14Q6PJT7 736 aaKnown RBP19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms