RNA–Protein interactions for RNA: ENST00000433297.2

HMGCS1-202, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HMGCS1, Length 3,466 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-202ENST00000433297 SPDYE6P0CI01 402 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 COL6A2P12110 1019 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 PORP16435 677 aaPredicted RBP11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 ME2P23368 584 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 GRK2P25098 689 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 ESRRGP62508 458 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 MTA1Q13330 715 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 ADRM1Q16186 407 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 SPDYE2Q495Y8 402 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 RC3H1Q5TC82 1133 aaKnown RBP11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 SLC9A4Q6AI14 798 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 XKR5Q6UX68 686 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 NIPA2Q8N8Q9 360 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 TDRD5Q8NAT2 981 aaKnown RBP11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 NETO2Q8NC67 525 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 CNKSR2Q8WXI2 1034 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 LRTOMTQ8WZ04 291 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 RMND5BQ96G75 393 aaPredicted RBP11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 ZDHHC15Q96MV8 337 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 NPAS2Q99743 824 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 CIB1Q99828 191 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 ADPGKQ9BRR6 497 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 NTPCRQ9BSD7 190 aaKnown RBP11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 PCDHAC1Q9H158 963 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 RAVER2Q9HCJ3 691 aaKnown RBP11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 NGRNQ9NPE2 291 aaKnown RBP11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 BCAP29Q9UHQ4 241 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 PRPSAP2O60256 369 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 H6PDO95479 791 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 LSM8O95777 96 aaKnown RBP11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 ZNF23P17027 643 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 TCF7P36402 384 aaPredicted RBP11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 CCR10P46092 362 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 RXRGP48443 463 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 NUP107P57740 925 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 TFDP2Q14188 446 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 CYP2R1Q6VVX0 501 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 Q6ZNX1 250 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 GPR141Q7Z602 305 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 PCDH20Q8N6Y1 951 aaKnown RBP11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 CMASQ8NFW8 434 aaPredicted RBP11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 SIGLEC10Q96LC7 697 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 DHX35Q9H5Z1 703 aaKnown RBP11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 WDR41Q9HAD4 459 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 DCDC2Q9UHG0 476 aa11.85□□□□□ -0.51
HMGCS1-202ENST00000433297 TNRC6CQ9HCJ0 1690 aaKnown RBP11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 CLRN2A0PK11 232 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 RGSL1A5PLK6 1076 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 FAM159BA6NKW6 160 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 RAD17O75943 681 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 LYPLA2O95372 231 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 ZFXP17010 805 aaPredicted RBP11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 ZFP1Q6P2D0 407 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 LRRC43Q8N309 656 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 ZNF786Q8N393 782 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 CDKL2Q92772 493 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 FERMT1Q9BQL6 677 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 FAM96AQ9H5X1 160 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 DHX33Q9H6R0 707 aaKnown RBP11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 CDC14AQ9UNH5 594 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 PCDHA10Q9Y5I2 948 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 CDY2AQ9Y6F7 541 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 CDY1Q9Y6F8 540 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 ZNF195O14628 629 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 ERBB2P04626 1255 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 MYL4P12829 197 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 MX2P20592 715 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 HSPA13P48723 471 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 GTF2A2P52657 109 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 ZNF423Q2M1K9 1284 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 MGAT5BQ3V5L5 792 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 PLD5Q8N7P1 536 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 UBA3Q8TBC4 463 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 WDR37Q9Y2I8 494 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 FIS1Q9Y3D6 152 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 CSDE1O75534 798 aaKnown RBP11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 ERVK-10P10266 1014 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 ALOX15P16050 662 aaPredicted RBP11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 PDGFRAP16234 1089 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 JAK3P52333 1124 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 YWHAEP62258 255 aaKnown RBP11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 RELAQ04206 551 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 NAPRTQ6XQN6 538 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 ARL10Q8N8L6 244 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 FAM47BQ8NA70 645 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 RMDN3Q96TC7 470 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 CGRRF1Q99675 332 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 CEP41Q9BYV8 373 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 CDH19Q9H159 772 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 SDCBP2Q9H190 292 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 COQ6Q9Y2Z9 468 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 PCDHA11Q9Y5I1 949 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 UBIAD1Q9Y5Z9 338 aa11.84□□□□□ -0.51
HMGCS1-202ENST00000433297 PSMD12O00232 456 aaPredicted RBP11.83□□□□□ -0.52
HMGCS1-202ENST00000433297 PLOD2O00469 737 aa11.83□□□□□ -0.52
HMGCS1-202ENST00000433297 FBP2O00757 339 aa11.83□□□□□ -0.52
HMGCS1-202ENST00000433297 FAM189A1O60320 539 aa11.83□□□□□ -0.52
HMGCS1-202ENST00000433297 CHRNGP07510 517 aa11.83□□□□□ -0.52
HMGCS1-202ENST00000433297 CKMT2P17540 419 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms