RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 SIX5Q8N196 739 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 COMMD9Q9P000 198 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 E7ENQ6 273 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 SNPHO15079 494 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 EPN2O95208 641 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 PARNO95453 639 aaKnown RBP7.01□□□□□ -1.29
SCN1A-204ENST00000423058 CSF1RP07333 972 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 SERPINB5P36952 375 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 CLK2P49760 499 aaKnown RBP7.01□□□□□ -1.29
SCN1A-204ENST00000423058 NAA20P61599 178 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 FAAH2Q6GMR7 532 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 ACOT1Q86TX2 421 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 NT5DC3Q86UY8 548 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 BTBD9Q96Q07 612 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 FTHL17Q9BXU8 183 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 NDUFA13Q9P0J0 144 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 A0A087WWV3 80 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 E2F8A0AVK6 867 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 CCNT2O60583 730 aaKnown RBP7□□□□□ -1.29
SCN1A-204ENST00000423058 MAPK8P45983 427 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 SF3B3Q15393 1217 aaKnown RBP7□□□□□ -1.29
SCN1A-204ENST00000423058 NECAB2Q7Z6G3 386 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 ATL1Q8WXF7 558 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 ACOX2Q99424 681 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 MIR1-1HGQ9H1L0 117 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 GPAMQ9HCL2 828 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 WHRNQ9P202 907 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 DAGLAQ9Y4D2 1042 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 TYMPP19971 482 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 MDH1P40925 334 aaKnown RBP7□□□□□ -1.29
SCN1A-204ENST00000423058 PKP1Q13835 747 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 KLHL12Q53G59 568 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 GLRA4Q5JXX5 417 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 LIN54Q6MZP7 749 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 FAM171BQ6P995 826 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 RNF44Q7L0R7 432 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 TRAPPC5Q8IUR0 188 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 MCEMP1Q8IX19 187 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 TDRD5Q8NAT2 981 aaKnown RBP7□□□□□ -1.29
SCN1A-204ENST00000423058 SETD9Q8NE22 299 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 LENG9Q96B70 501 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 NMRAL1Q9HBL8 299 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 POLD4Q9HCU8 107 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 ASAH2Q9NR71 780 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 ZNF510Q9Y2H8 683 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 N6AMT1Q9Y5N5 214 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 TAF6LQ9Y6J9 622 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 MCIDASD6RGH6 385 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 VTNP04004 478 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 AKR1A1P14550 325 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 LGALS3BPQ08380 585 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 VAC14Q08AM6 782 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 FBXO47Q5MNV8 452 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 ERMARDQ5T6L9 678 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 ARMC12Q5T9G4 340 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 MZT2AQ6P582 158 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 KLHL17Q6TDP4 642 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 WDR49Q8IV35 697 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 ZNF671Q8TAW3 534 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 UTP15Q8TED0 518 aaKnown RBP7□□□□□ -1.29
SCN1A-204ENST00000423058 CPB2Q96IY4 423 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 TARS2Q9BW92 718 aaKnown RBP7□□□□□ -1.29
SCN1A-204ENST00000423058 ELL3Q9HB65 397 aaPredicted RBP7□□□□□ -1.29
SCN1A-204ENST00000423058 GPRC5DQ9NZD1 345 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 GNPTGQ9UJJ9 305 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 KIAA1210Q9ULL0 1709 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 CASTOR2A6NHX0 329 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 KPNA3O00505 521 aaPredicted RBP7□□□□□ -1.29
SCN1A-204ENST00000423058 GAKO14976 1311 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 ENDOD1O94919 500 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 ATG7O95352 703 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 SLC2A4P14672 509 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 ITGA8P53708 1063 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 SMCO1Q147U7 214 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 PKN1Q16512 942 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 INTS11Q5TA45 600 aaKnown RBP7□□□□□ -1.29
SCN1A-204ENST00000423058 ZNF410Q86VK4 478 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 SMYD1Q8NB12 490 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 HAVCR1Q96D42 359 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 PLA2G12BQ9BX93 195 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 PABPC3Q9H361 631 aaKnown RBP7□□□□□ -1.29
SCN1A-204ENST00000423058 PRDM16Q9HAZ2 1276 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 RRAGCQ9HB90 399 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 MYH15Q9Y2K3 1946 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 TRIM43BA6NCK2 446 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 MFN2O95140 757 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 CYP11B1P15538 503 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 GRTP1Q5TC63 336 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 OR56A4Q8NGH8 313 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 OXER1Q8TDS5 423 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 C2orf49Q9BVC5 232 aaPredicted RBP7□□□□□ -1.29
SCN1A-204ENST00000423058 DSN1Q9H410 356 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 TMEM216Q9P0N5 145 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 AP4E1Q9UPM8 1137 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7□□□□□ -1.29
SCN1A-204ENST00000423058 hCG_2014768A0A024R1R8 64 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 DYTNA2CJ06 578 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 SKAP2O75563 359 aaPredicted RBP7□□□□□ -1.29
SCN1A-204ENST00000423058 CCNB2O95067 398 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 CLUP10909 449 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms