RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 ITGALP20701 1170 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 GPD1P21695 349 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 KLHL12Q53G59 568 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 FASTKD1Q53R41 847 aaKnown RBP7.49□□□□□ -1.21
SCN9A-202ENST00000409435 VITQ6UXI7 678 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 ADAMTS19Q8TE59 1207 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 P2RY13Q9BPV8 354 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 C4BP0C0L5 1744 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 WDR91A4D1P6 747 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 ARL5CA6NH57 179 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 TAF4O00268 1085 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 LSM1O15116 133 aaKnown RBP7.48□□□□□ -1.21
SCN9A-202ENST00000409435 LCA5LO95447 670 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 SLURP2P0DP57 97 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 CSTF2P33240 577 aaKnown RBP eCLIP7.48□□□□□ -1.211e-6■□□□□ 8
SCN9A-202ENST00000409435 CCT3P49368 545 aaKnown RBP7.48□□□□□ -1.21
SCN9A-202ENST00000409435 NDUFA8P51970 172 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 FCHO2Q0JRZ9 810 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 ADRM1Q16186 407 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 CNGA3Q16281 694 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 TTLL9Q3SXZ7 439 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 ANKS1BQ7Z6G8 1248 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 TTC7BQ86TV6 843 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 SMYD4Q8IYR2 804 aaPredicted RBP7.48□□□□□ -1.21
SCN9A-202ENST00000409435 SLC25A41Q8N5S1 370 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 RHBDD1Q8TEB9 315 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 DDX1Q92499 740 aaKnown RBP7.48□□□□□ -1.21
SCN9A-202ENST00000409435 EDEM1Q92611 657 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 KLHL5Q96PQ7 755 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 NSMCE4AQ9NXX6 385 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 ATP6V1HQ9UI12 483 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 DNPEPQ9ULA0 475 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 KCNA2P16389 499 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 RAP1GAPP47736 663 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 PTPN5P54829 565 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 AP1S2P56377 157 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 ARPC4P59998 168 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 GPAT2Q6NUI2 795 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 WFIKKN2Q8TEU8 576 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 C18orf25Q96B23 403 aaPredicted RBP7.48□□□□□ -1.21
SCN9A-202ENST00000409435 ADAMTS10Q9H324 1103 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 AIPL1Q9NZN9 384 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 A0A1W2PRU2 124 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 ENPP3O14638 875 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 MEIS2O14770 477 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 HNRNPRO43390 633 aaKnown RBP7.48□□□□□ -1.21
SCN9A-202ENST00000409435 TCF3P15923 654 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 GTF2H1P32780 548 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 GRM5P41594 1212 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 ATP2C1P98194 919 aaPredicted RBP7.48□□□□□ -1.21
SCN9A-202ENST00000409435 CCDC142Q17RM4 750 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 SPOPLQ6IQ16 392 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP7.48□□□□□ -1.21
SCN9A-202ENST00000409435 FRMD5Q7Z6J6 570 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 CRLF3Q8IUI8 442 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 GRAMD1CQ8IYS0 662 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 IL22RA1Q8N6P7 574 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 C12orf76Q8N812 135 aaPredicted RBP7.48□□□□□ -1.21
SCN9A-202ENST00000409435 DEPDC1BQ8WUY9 529 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 DNAJC9Q8WXX5 260 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 GMLQ99445 158 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 SLC38A3Q99624 504 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 CNPPD1Q9BV87 410 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 PARD6BQ9BYG5 372 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 CCDC134Q9H6E4 229 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 NRDE2Q9H7Z3 1164 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 PAPOLBQ9NRJ5 636 aaKnown RBP7.48□□□□□ -1.21
SCN9A-202ENST00000409435 IL17RBQ9NRM6 502 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 L3MBTL1Q9Y468 752 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 F5H423 210 aaPredicted RBP7.48□□□□□ -1.21
SCN9A-202ENST00000409435 MT-ND3P03897 115 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 SOD2P04179 222 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 KRT16P08779 473 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 MZF1P28698 734 aaPredicted RBP7.48□□□□□ -1.21
SCN9A-202ENST00000409435 GUCY1A2P33402 732 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 HADHAP40939 763 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 NUMBP49757 651 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 VCPP55072 806 aaKnown RBP7.48□□□□□ -1.21
SCN9A-202ENST00000409435 PTENP60484 403 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 ORC1Q13415 861 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 TRIM25Q14258 630 aaKnown RBP7.48□□□□□ -1.21
SCN9A-202ENST00000409435 CAPN12Q6ZSI9 719 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 RASGRP3Q8IV61 690 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 CLYBLQ8N0X4 340 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 TMEM176AQ96HP8 235 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 ADAM7Q9H2U9 754 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 NDST4Q9H3R1 872 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 CAPN10Q9HC96 672 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 PHPT1Q9NRX4 125 aaPredicted RBP7.48□□□□□ -1.21
SCN9A-202ENST00000409435 ATAD3AQ9NVI7 634 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 BFARQ9NZS9 450 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 KIAA1468Q9P260 1216 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 RNF14Q9UBS8 474 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 FTSJ1Q9UET6 329 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 ZFP37Q9Y6Q3 630 aaPredicted RBP7.48□□□□□ -1.21
SCN9A-202ENST00000409435 NFAT5O94916 1531 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 FAM208AQ9UK61 1670 aaKnown RBP7.48□□□□□ -1.21
SCN9A-202ENST00000409435 A0A1W2PQ27 194 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 A0A1W2PQ64 194 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 A0A1W2PQD8 194 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 88.9 ms