RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 WDR55Q9H6Y2 383 aaPredicted RBP13.32□□□□□ -0.28
PTPRN-202ENST00000409251 CDHR5Q9HBB8 845 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 NGRNQ9NPE2 291 aaKnown RBP13.32□□□□□ -0.28
PTPRN-202ENST00000409251 PARVAQ9NVD7 372 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 KCNH4Q9UQ05 1017 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 UBE4BO95155 1302 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 AGRPO00253 132 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 TPD52L2O43399 206 aaKnown RBP13.31□□□□□ -0.28
PTPRN-202ENST00000409251 MYL3P08590 195 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 NFICP08651 508 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 SMPD1P17405 629 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 AKAP5P24588 427 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 CDH6P55285 790 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 LDLRAP1Q5SW96 308 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 LPIN3Q9BQK8 851 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 SMARCAD1Q9H4L7 1026 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 UBAP1Q9NZ09 502 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 HSFX1Q9UBD0 423 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 TMA7Q9Y2S6 64 aaKnown RBP13.31□□□□□ -0.28
PTPRN-202ENST00000409251 SNX13Q9Y5W8 968 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 V9GYQ6 96 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 GPR25O00155 361 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 MAFO75444 373 aaPredicted RBP13.31□□□□□ -0.28
PTPRN-202ENST00000409251 CD1EP15812 388 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 KLF1Q13351 362 aaPredicted RBP13.31□□□□□ -0.28
PTPRN-202ENST00000409251 METTL25Q8N6Q8 603 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 ALKBH8Q96BT7 664 aaKnown RBP13.31□□□□□ -0.28
PTPRN-202ENST00000409251 MS4A4AQ96JQ5 239 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 ZNF512Q96ME7 567 aaPredicted RBP13.31□□□□□ -0.28
PTPRN-202ENST00000409251 DHX35Q9H5Z1 703 aaKnown RBP13.31□□□□□ -0.28
PTPRN-202ENST00000409251 RRN3Q9NYV6 651 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 ERAP1Q9NZ08 941 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 IP6K2Q9UHH9 426 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 CASQ2O14958 399 aaPredicted RBP13.31□□□□□ -0.28
PTPRN-202ENST00000409251 SNAI1O95863 264 aaPredicted RBP13.31□□□□□ -0.28
PTPRN-202ENST00000409251 ITGB3P05106 788 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 NR4A1P22736 598 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 TMED10P49755 219 aaKnown RBP13.31□□□□□ -0.28
PTPRN-202ENST00000409251 ART3Q13508 389 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 SEPT6Q14141 434 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 LPIN1Q14693 890 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 PPM1JQ5JR12 505 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 N4BP2L1Q5TBK1 243 aaPredicted RBP13.31□□□□□ -0.28
PTPRN-202ENST00000409251 ADGRD1Q6QNK2 874 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 ZNF786Q8N393 782 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 NAT16Q8N8M0 369 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 TTC13Q8NBP0 860 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 NTPCRQ9BSD7 190 aaKnown RBP13.31□□□□□ -0.28
PTPRN-202ENST00000409251 SHOC2Q9UQ13 582 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 CROCCQ5TZA2 2017 aa13.31□□□□□ -0.28
PTPRN-202ENST00000409251 J3QRK9 145 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 MAGEC1O60732 1142 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 CRTAMO95727 393 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 TFAP2AP05549 437 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 CCNIQ14094 377 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 CST9Q5W186 159 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 XKR5Q6UX68 686 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 BHLHE22Q8NFJ8 381 aaPredicted RBP13.3□□□□□ -0.28
PTPRN-202ENST00000409251 FBXL8Q96CD0 374 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 MROH8Q9H579 483 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 KCNK4Q9NYG8 393 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 HBS1LQ9Y450 684 aaKnown RBP13.3□□□□□ -0.28
PTPRN-202ENST00000409251 RGPD3A6NKT7 1758 aaPredicted RBP13.3□□□□□ -0.28
PTPRN-202ENST00000409251 RGPD4Q7Z3J3 1758 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 SMIM31A0A1B0GVY4 71 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 ZBTB42B2RXF5 422 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 TMX2-CTNND1H3BSU7 103 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 PSTPIP1O43586 416 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 MSCO60682 206 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 SIN3BO75182 1162 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 FAM58BPP0C7Q3 252 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 EDNRBP24530 442 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 ICAM3P32942 547 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 KPNA1P52294 538 aaPredicted RBP13.3□□□□□ -0.28
PTPRN-202ENST00000409251 SLC5A3P53794 718 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 ZNF699Q32M78 642 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 MAP3K21Q5TCX8 1036 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 SNX32Q86XE0 403 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 MFSD14AQ96MC6 490 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 PCDH9Q9HC56 1237 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 EURLQ9NYK6 297 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 HCRTO43612 131 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 KRT38O76015 456 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 ZBED1O96006 694 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 EEF1B2P24534 225 aaKnown RBP13.3□□□□□ -0.28
PTPRN-202ENST00000409251 HADHBP55084 474 aaKnown RBP13.3□□□□□ -0.28
PTPRN-202ENST00000409251 PHEXP78562 749 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 OGDHQ02218 1023 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 LDLRAD1Q5T700 205 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 PATL1Q86TB9 770 aaKnown RBP13.3□□□□□ -0.28
PTPRN-202ENST00000409251 SLC26A11Q86WA9 606 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 C7orf31Q8N865 590 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 CXorf38Q8TB03 319 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 IL1RL2Q9HB29 575 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 STRIP2Q9ULQ0 834 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 SH3GLB1Q9Y371 365 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 SCINQ9Y6U3 715 aa13.3□□□□□ -0.28
PTPRN-202ENST00000409251 ZBBXA8MT70 800 aa13.29□□□□□ -0.28
PTPRN-202ENST00000409251 GOLGA8TH3BQL2 631 aa13.29□□□□□ -0.28
PTPRN-202ENST00000409251 VILLO15195 856 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms