RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 RNF187Q5TA31 235 aaPredicted RBP13.35□□□□□ -0.27
SMARCB1-203ENST00000407082 RNASEH2BQ5TBB1 312 aaKnown RBP13.35□□□□□ -0.27
SMARCB1-203ENST00000407082 CD300LGQ6UXG3 332 aa13.35□□□□□ -0.27
SMARCB1-203ENST00000407082 BZW1Q7L1Q6 419 aaKnown RBP13.35□□□□□ -0.27
SMARCB1-203ENST00000407082 DPH6Q7L8W6 267 aa13.35□□□□□ -0.27
SMARCB1-203ENST00000407082 DDX53Q86TM3 631 aaKnown RBP13.35□□□□□ -0.27
SMARCB1-203ENST00000407082 CCDC13Q8IYE1 715 aa13.35□□□□□ -0.27
SMARCB1-203ENST00000407082 SLC44A3Q8N4M1 653 aa13.35□□□□□ -0.27
SMARCB1-203ENST00000407082 ST13P5Q8NFI4 369 aaPredicted RBP13.35□□□□□ -0.27
SMARCB1-203ENST00000407082 UHMK1Q8TAS1 419 aaKnown RBP13.35□□□□□ -0.27
SMARCB1-203ENST00000407082 ACTL9Q8TC94 416 aa13.35□□□□□ -0.27
SMARCB1-203ENST00000407082 RXFP2Q8WXD0 754 aa13.35□□□□□ -0.27
SMARCB1-203ENST00000407082 TNIP3Q96KP6 325 aa13.35□□□□□ -0.27
SMARCB1-203ENST00000407082 FERMT1Q9BQL6 677 aa13.35□□□□□ -0.27
SMARCB1-203ENST00000407082 DDX23Q9BUQ8 820 aaKnown RBP13.35□□□□□ -0.27
SMARCB1-203ENST00000407082 EMILIN2Q9BXX0 1053 aa13.35□□□□□ -0.27
SMARCB1-203ENST00000407082 SNX25Q9H3E2 840 aa13.35□□□□□ -0.27
SMARCB1-203ENST00000407082 KDM4CQ9H3R0 1056 aa13.35□□□□□ -0.27
SMARCB1-203ENST00000407082 KCNK9Q9NPC2 374 aa13.35□□□□□ -0.27
SMARCB1-203ENST00000407082 SMG5Q9UPR3 1016 aaKnown RBP13.35□□□□□ -0.27
SMARCB1-203ENST00000407082 DCDC2BA2VCK2 349 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 C2CD4BA6NLJ0 364 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 H0YHG0 523 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 TP73O15350 636 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 IFNB1P01574 187 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 VIMP08670 466 aaKnown RBP13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 BRAFP15056 766 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 SDHBP21912 280 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 SLCO1A2P46721 670 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 BRCC3P46736 316 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 TAF6P49848 677 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 ATXN1P54253 815 aaKnown RBP13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 BCAT1P54687 386 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 LILRA4P59901 499 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 IL9RQ01113 521 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 ROR1Q01973 937 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 CBLBQ13191 982 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 HIF1AQ16665 826 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 GOLGA7BQ2TAP0 167 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 VARS2Q5ST30 1063 aaKnown RBP13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 KIAA0319Q5VV43 1072 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 DAB2IPQ5VWQ8 1189 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 FUT10Q6P4F1 479 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 TMEM110Q86TL2 294 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 PDIK1LQ8N165 341 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 ATP11CQ8NB49 1132 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 GPR152Q8TDT2 470 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 HSFY1Q96LI6 401 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 CALN1Q9BXU9 219 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 SLC4A5Q9BY07 1137 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 GPR62Q9BZJ7 368 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 KLHL11Q9NVR0 708 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 PAK5Q9P286 719 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 STK39Q9UEW8 545 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 CYTH4Q9UIA0 394 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 CDV3Q9UKY7 258 aaKnown RBP13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 SNX9Q9Y5X1 595 aa13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 SF3B1O75533 1304 aaKnown RBP eCLIP13.34□□□□□ -0.27
SMARCB1-203ENST00000407082 CCDC195A0A1B0GUA6 201 aa13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 KPNA7A9QM74 516 aa13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 I3L4J1 428 aa13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 SPTLC1O15269 473 aa13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 FSBPO95073 299 aa13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 SRFP11831 508 aa13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 PECAM1P16284 738 aaPredicted RBP13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 PAX3P23760 479 aa13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 STX2P32856 288 aa13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 CDH6P55285 790 aa13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 BST2Q10589 180 aaKnown RBP13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 ELAVL2Q12926 359 aaKnown RBP13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 IFT88Q13099 833 aa13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 ZC3H12AQ5D1E8 599 aaKnown RBP13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 FAM171A1Q5VUB5 890 aa13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 DARS2Q6PI48 645 aaKnown RBP13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 C6orf89Q6UWU4 347 aa13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 DSTYKQ6XUX3 929 aa13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 TAS1R1Q7RTX1 841 aa13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 CEP57Q86XR8 500 aa13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 PALM2Q8IXS6 379 aa13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 CRYBG2Q8N1P7 616 aa13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 GBP7Q8N8V2 638 aaPredicted RBP13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 SUMF1Q8NBK3 374 aa13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 OR6B3Q8NGW1 331 aa13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 UBA3Q8TBC4 463 aa13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 PYROXD1Q8WU10 500 aa13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 HSPH1Q92598 858 aa13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 ALKBH8Q96BT7 664 aaKnown RBP13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 ZNF317Q96PQ6 595 aaPredicted RBP13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 KLHL5Q96PQ7 755 aa13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 TWNKQ96RR1 684 aa13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 TMEM121Q9BTD3 319 aa13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 VN1R3Q9BXE9 311 aa13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 FOXQ1Q9C009 403 aa13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 RABEP2Q9H5N1 569 aa13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 VPS37BQ9H9H4 285 aa13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 SSU72Q9NP77 194 aaKnown RBP13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 SPATA6Q9NWH7 488 aaPredicted RBP13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 GDAP2Q9NXN4 497 aa13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 PCSK1NQ9UHG2 260 aa13.33□□□□□ -0.28
SMARCB1-203ENST00000407082 NAALADL1Q9UQQ1 740 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms