RNA–Protein interactions for RNA: ENST00000406134.5

MSH2-202, Transcript of mutS homolog 2, humanhuman

TSL 1 (best) BASIC

Gene MSH2, Length 3,628 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-202ENST00000406134 FASTKD1Q53R41 847 aaKnown RBP10.13□□□□□ -0.79
MSH2-202ENST00000406134 WDR78Q5VTH9 848 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 SYPL2Q5VXT5 272 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 KCTD11Q693B1 232 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 NAPRTQ6XQN6 538 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 STRADAQ7RTN6 431 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 ZNF410Q86VK4 478 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 FAM131BQ86XD5 332 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 ULK2Q8IYT8 1036 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 NPWQ8N729 165 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 SLC7A14Q8TBB6 771 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 SLC2A14Q8TDB8 520 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 NPY6RQ99463 290 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 NEU3Q9UQ49 428 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 IKBKGQ9Y6K9 419 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 CAPN9O14815 690 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 PDGFRBP09619 1106 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 PSMB4P28070 264 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 IREB2P48200 963 aaKnown RBP10.13□□□□□ -0.79
MSH2-202ENST00000406134 RPL10AP62906 217 aaKnown RBP10.13□□□□□ -0.79
MSH2-202ENST00000406134 PDE1BQ01064 536 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 SLC34A1Q06495 639 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 SMAD1Q15797 465 aaKnown RBP10.13□□□□□ -0.79
MSH2-202ENST00000406134 DCAF4L1Q3SXM0 396 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 TRIM68Q6AZZ1 485 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 CLEC14AQ86T13 490 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 NUDCD3Q8IVD9 361 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 TTC39CQ8N584 583 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 COLGALT1Q8NBJ5 622 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 SCG3Q8WXD2 468 aaKnown RBP10.13□□□□□ -0.79
MSH2-202ENST00000406134 DNAJC9Q8WXX5 260 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 C1orf21Q9H246 121 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 XAB2Q9HCS7 855 aaKnown RBP10.13□□□□□ -0.79
MSH2-202ENST00000406134 VTA1Q9NP79 307 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 PIGVQ9NUD9 493 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 TMEM216Q9P0N5 145 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 ASB3Q9Y575 518 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 DOCK4Q8N1I0 1966 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 SF3B1O75533 1304 aaKnown RBP eCLIP10.13□□□□□ -0.794e-7■■■■■ 49.6
MSH2-202ENST00000406134 ASB14A6NK59 587 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 RNF103O00237 685 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 CLDN5O00501 218 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 KCNA4P22459 653 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 CD68P34810 354 aaPredicted RBP10.13□□□□□ -0.79
MSH2-202ENST00000406134 MATKP42679 507 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 CACNA2D1P54289 1103 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 BCAT1P54687 386 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 AP1B1Q10567 949 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 BIRC2Q13490 618 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 PAFAH1B3Q15102 231 aaKnown RBP10.13□□□□□ -0.79
MSH2-202ENST00000406134 SLC25A52Q3SY17 297 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 N4BP2L1Q5TBK1 243 aaPredicted RBP10.13□□□□□ -0.79
MSH2-202ENST00000406134 SLC27A1Q6PCB7 646 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 C4orf22Q6V702 233 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 RIPOR1Q6ZS17 1223 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 RFX8Q6ZV50 586 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 C10orf107Q8IVU9 208 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 TFB1MQ8WVM0 346 aaKnown RBP10.13□□□□□ -0.79
MSH2-202ENST00000406134 SLC2A13Q96QE2 648 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 WDR6Q9NNW5 1121 aaKnown RBP10.13□□□□□ -0.79
MSH2-202ENST00000406134 SETD4Q9NVD3 440 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.13□□□□□ -0.79
MSH2-202ENST00000406134 ZFATQ9P243 1243 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 PPM1HQ9ULR3 514 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 MAD1L1Q9Y6D9 718 aa10.13□□□□□ -0.79
MSH2-202ENST00000406134 ZCWPW2A0A1B0GU75 182 aa10.12□□□□□ -0.79
MSH2-202ENST00000406134 B2RBV5 119 aa10.12□□□□□ -0.79
MSH2-202ENST00000406134 ITGA2BP08514 1039 aa10.12□□□□□ -0.79
MSH2-202ENST00000406134 SBK3P0C264 359 aa10.12□□□□□ -0.79
MSH2-202ENST00000406134 ESRRAP11474 423 aaPredicted RBP10.12□□□□□ -0.79
MSH2-202ENST00000406134 VHLP40337 213 aa10.12□□□□□ -0.79
MSH2-202ENST00000406134 GTF2A2P52657 109 aa10.12□□□□□ -0.79
MSH2-202ENST00000406134 ACTR3P61158 418 aa10.12□□□□□ -0.79
MSH2-202ENST00000406134 THOC5Q13769 683 aaKnown RBP10.12□□□□□ -0.79
MSH2-202ENST00000406134 CES3Q6UWW8 571 aa10.12□□□□□ -0.79
MSH2-202ENST00000406134 CTU1Q7Z7A3 348 aaKnown RBP10.12□□□□□ -0.79
MSH2-202ENST00000406134 TMPRSS6Q8IU80 811 aa10.12□□□□□ -0.79
MSH2-202ENST00000406134 DEFB106AQ8N104 65 aa10.12□□□□□ -0.79
MSH2-202ENST00000406134 DTX3LQ8TDB6 740 aa10.12□□□□□ -0.79
MSH2-202ENST00000406134 DEPDC1BQ8WUY9 529 aa10.12□□□□□ -0.79
MSH2-202ENST00000406134 GATA6Q92908 595 aa10.12□□□□□ -0.79
MSH2-202ENST00000406134 THAP1Q9NVV9 213 aa10.12□□□□□ -0.79
MSH2-202ENST00000406134 DDX43Q9NXZ2 648 aaKnown RBP10.12□□□□□ -0.79
MSH2-202ENST00000406134 TAGLN3Q9UI15 199 aa10.12□□□□□ -0.79
MSH2-202ENST00000406134 GBF1Q92538 1859 aa10.12□□□□□ -0.79
MSH2-202ENST00000406134 PLXNA3P51805 1871 aa10.12□□□□□ -0.79
MSH2-202ENST00000406134 SMIM28A0A1B0GU29 152 aa10.12□□□□□ -0.79
MSH2-202ENST00000406134 MBLAC1A4D2B0 266 aaPredicted RBP10.12□□□□□ -0.79
MSH2-202ENST00000406134 UNCXA6NJT0 531 aa10.12□□□□□ -0.79
MSH2-202ENST00000406134 G3V2L1 256 aa10.12□□□□□ -0.79
MSH2-202ENST00000406134 NVLO15381 856 aaKnown RBP10.12□□□□□ -0.79
MSH2-202ENST00000406134 KRT38O76015 456 aa10.12□□□□□ -0.79
MSH2-202ENST00000406134 LMNAP02545 664 aaKnown RBP10.12□□□□□ -0.79
MSH2-202ENST00000406134 C6orf222P0C671 652 aaPredicted RBP10.12□□□□□ -0.79
MSH2-202ENST00000406134 ALDH18A1P54886 795 aaKnown RBP10.12□□□□□ -0.79
MSH2-202ENST00000406134 SESN3P58005 492 aa10.12□□□□□ -0.79
MSH2-202ENST00000406134 VWA5B1Q5TIE3 1220 aa10.12□□□□□ -0.79
MSH2-202ENST00000406134 DPY19L2Q6NUT2 758 aa10.12□□□□□ -0.79
MSH2-202ENST00000406134 KYAT3Q6YP21 454 aaKnown RBP10.12□□□□□ -0.79
MSH2-202ENST00000406134 GPRIN1Q7Z2K8 1008 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms