RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 CLASP2O75122 1294 aaKnown RBP3.83□□□□□ -1.8
RTN4-208ENST00000404909 HDCP19113 662 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 RPL21P46778 160 aaKnown RBP3.83□□□□□ -1.8
RTN4-208ENST00000404909 NRIP1P48552 1158 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 HARS2P49590 506 aaKnown RBP3.83□□□□□ -1.8
RTN4-208ENST00000404909 LMNB2Q03252 620 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 AP1B1Q10567 949 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 GPS1Q13098 491 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 CALCOCO2Q13137 446 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 DPYSQ14117 519 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 NOMO1Q15155 1222 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 OASLQ15646 514 aaKnown RBP3.83□□□□□ -1.8
RTN4-208ENST00000404909 PABPC1LQ4VXU2 614 aaKnown RBP3.83□□□□□ -1.8
RTN4-208ENST00000404909 SYCP2LQ5T4T6 812 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 STXBP5Q5T5C0 1151 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 RFWD3Q6PCD5 774 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 LRRC31Q6UY01 552 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 ADGRD2Q7Z7M1 963 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 C14orf80Q86SX3 495 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 TMEM150AQ86TG1 271 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 CHSY1Q86X52 802 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 DENND1CQ8IV53 801 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 UNC45BQ8IWX7 931 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 ALLCQ8N6M5 410 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 ATP6V0D2Q8N8Y2 350 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 FAM71BQ8TC56 605 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 OVCA2Q8WZ82 227 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 MRPS31Q92665 395 aaKnown RBP3.83□□□□□ -1.8
RTN4-208ENST00000404909 NKD2Q969F2 451 aaPredicted RBP3.83□□□□□ -1.8
RTN4-208ENST00000404909 TRMT2BQ96GJ1 504 aaKnown RBP3.83□□□□□ -1.8
RTN4-208ENST00000404909 SLC39A13Q96H72 371 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 BTN2A3PQ96KV6 586 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 GCNAQ96QF7 691 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 SLC22A12Q96S37 553 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 HAPLN3Q96S86 360 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 TLE6Q9H808 572 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 RCOR3Q9P2K3 495 aaPredicted RBP3.83□□□□□ -1.8
RTN4-208ENST00000404909 NUP205Q92621 2012 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 EPOPA6NHQ4 379 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 E9PAM4 449 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 F5H423 210 aaPredicted RBP3.82□□□□□ -1.8
RTN4-208ENST00000404909 DFFAO00273 331 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 DCLK1O15075 740 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 F11P03951 625 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 ITGAVP06756 1048 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 FAM153BP0C7A2 387 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 RBL1P28749 1068 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 ACTN2P35609 894 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 NR2C2P49116 596 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 KPNA1P52294 538 aaPredicted RBP3.82□□□□□ -1.8
RTN4-208ENST00000404909 MLLT6P55198 1093 aaPredicted RBP3.82□□□□□ -1.8
RTN4-208ENST00000404909 COG7P83436 770 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 SMAD3P84022 425 aaKnown RBP3.82□□□□□ -1.8
RTN4-208ENST00000404909 SEMA3BQ13214 749 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 CUL1Q13616 776 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 AUHQ13825 339 aaKnown RBP3.82□□□□□ -1.8
RTN4-208ENST00000404909 RAB30Q15771 203 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 P3H1Q32P28 736 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 FAM153CQ494X1 144 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 MAP9Q49MG5 647 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 MS4A13Q5J8X5 152 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 NUGGCQ68CJ6 796 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 DUPD1Q68J44 220 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 CCDC25Q86WR0 208 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 CIR1Q86X95 450 aaPredicted RBP3.82□□□□□ -1.8
RTN4-208ENST00000404909 VSIG1Q86XK7 387 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 ZNF354CQ86Y25 554 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 NPWQ8N729 165 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 C12orf76Q8N812 135 aaPredicted RBP3.82□□□□□ -1.8
RTN4-208ENST00000404909 TBC1D31Q96DN5 1066 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 SAMD11Q96NU1 681 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 RPRD1AQ96P16 312 aaPredicted RBP3.82□□□□□ -1.8
RTN4-208ENST00000404909 APOL5Q9BWW9 433 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 SMG9Q9H0W8 520 aaKnown RBP3.82□□□□□ -1.8
RTN4-208ENST00000404909 OSBPL2Q9H1P3 480 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 NEUROG2Q9H2A3 272 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 IL21Q9HBE4 155 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 FAM153AQ9UHL3 310 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 DRG1Q9Y295 367 aaKnown RBP3.82□□□□□ -1.8
RTN4-208ENST00000404909 ASB3Q9Y575 518 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 HCFC2Q9Y5Z7 792 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 PATJQ8NI35 1801 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 ZNF487B1APH4 448 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 NRG2O14511 850 aaPredicted RBP3.82□□□□□ -1.8
RTN4-208ENST00000404909 OAS1P00973 400 aaKnown RBP3.82□□□□□ -1.8
RTN4-208ENST00000404909 CORO1AP31146 461 aaKnown RBP3.82□□□□□ -1.8
RTN4-208ENST00000404909 PPP3CCP48454 512 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 SLC11A2P49281 568 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 NTHL1P78549 312 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 NNTQ13423 1086 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 SNX30Q5VWJ9 437 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 HEATR6Q6AI08 1181 aaKnown RBP3.82□□□□□ -1.8
RTN4-208ENST00000404909 FBXL22Q6P050 247 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 DRICH1Q6PGQ1 229 aaPredicted RBP3.82□□□□□ -1.8
RTN4-208ENST00000404909 TMC5Q6UXY8 1006 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 PDZD4Q76G19 769 aaPredicted RBP3.82□□□□□ -1.8
RTN4-208ENST00000404909 BZW1Q7L1Q6 419 aaKnown RBP3.82□□□□□ -1.8
RTN4-208ENST00000404909 TDHQ8IZJ6 230 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 CFAP52Q8N1V2 620 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms